Hb_002909_140

Information

Type -
Description -
Location Contig2909: 89348-96859
Sequence    

Annotation

kegg
ID tcc:TCM_025451
description Major facilitator superfamily protein
nr
ID XP_012090914.1
description PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
swissprot
ID Q6AWX0
description D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1
trembl
ID A0A067JQH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00566 PE=3 SV=1
Gene Ontology
ID GO:0016021
description d-xylose-proton symporter-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30487: 89403-94553 , PASA_asmbl_30488: 96036-96570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002909_140 0.0 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
2 Hb_007803_050 0.055266508 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]
3 Hb_000212_380 0.0615439032 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
4 Hb_012498_010 0.0646775954 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
5 Hb_001221_080 0.0651423334 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
6 Hb_010174_040 0.0672242472 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
7 Hb_002169_050 0.0677334155 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]
8 Hb_000441_220 0.0723099399 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001655_030 0.0740634225 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
10 Hb_003683_020 0.0769159439 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_000213_010 0.0770000425 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
12 Hb_000592_030 0.0771818414 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
13 Hb_000156_010 0.0778503842 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
14 Hb_000083_120 0.0790981397 - - transcription factor, putative [Ricinus communis]
15 Hb_005291_050 0.0794883246 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
16 Hb_012022_090 0.0798577914 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
17 Hb_020378_030 0.0819696538 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
18 Hb_002026_150 0.082146985 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
19 Hb_000617_180 0.0824336649 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
20 Hb_006660_010 0.0826584496 - - PREDICTED: exocyst complex component EXO84C isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002909_140 Hb_002909_140 Hb_007803_050 Hb_007803_050 Hb_002909_140--Hb_007803_050 Hb_000212_380 Hb_000212_380 Hb_002909_140--Hb_000212_380 Hb_012498_010 Hb_012498_010 Hb_002909_140--Hb_012498_010 Hb_001221_080 Hb_001221_080 Hb_002909_140--Hb_001221_080 Hb_010174_040 Hb_010174_040 Hb_002909_140--Hb_010174_040 Hb_002169_050 Hb_002169_050 Hb_002909_140--Hb_002169_050 Hb_006660_010 Hb_006660_010 Hb_007803_050--Hb_006660_010 Hb_000127_040 Hb_000127_040 Hb_007803_050--Hb_000127_040 Hb_012022_090 Hb_012022_090 Hb_007803_050--Hb_012022_090 Hb_000592_030 Hb_000592_030 Hb_007803_050--Hb_000592_030 Hb_002811_060 Hb_002811_060 Hb_007803_050--Hb_002811_060 Hb_001936_130 Hb_001936_130 Hb_000212_380--Hb_001936_130 Hb_012322_010 Hb_012322_010 Hb_000212_380--Hb_012322_010 Hb_000212_380--Hb_002169_050 Hb_001004_070 Hb_001004_070 Hb_000212_380--Hb_001004_070 Hb_000212_380--Hb_012498_010 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_000441_220 Hb_000441_220 Hb_001221_080--Hb_000441_220 Hb_001408_140 Hb_001408_140 Hb_001221_080--Hb_001408_140 Hb_000029_300 Hb_000029_300 Hb_001221_080--Hb_000029_300 Hb_013399_020 Hb_013399_020 Hb_001221_080--Hb_013399_020 Hb_000213_010 Hb_000213_010 Hb_001221_080--Hb_000213_010 Hb_003645_060 Hb_003645_060 Hb_010174_040--Hb_003645_060 Hb_010174_040--Hb_000592_030 Hb_000617_180 Hb_000617_180 Hb_010174_040--Hb_000617_180 Hb_001655_030 Hb_001655_030 Hb_010174_040--Hb_001655_030 Hb_143629_110 Hb_143629_110 Hb_010174_040--Hb_143629_110 Hb_002026_150 Hb_002026_150 Hb_002169_050--Hb_002026_150 Hb_000614_240 Hb_000614_240 Hb_002169_050--Hb_000614_240 Hb_002169_050--Hb_012498_010 Hb_000011_060 Hb_000011_060 Hb_002169_050--Hb_000011_060 Hb_002169_050--Hb_010142_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.4105 17.2627 22.4281 29.5932 23.9622 32.0658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9525 15.1435 32.1211 29.4157 20.7217

CAGE analysis