Hb_002910_010

Information

Type -
Description -
Location Contig2910: 16323-22174
Sequence    

Annotation

kegg
ID vvi:100245230
description bromodomain-containing protein DDB_G0270170-like
nr
ID XP_012073976.1
description PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067KND9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08870 PE=4 SV=1
Gene Ontology
ID GO:0016746
description bromodomain and phd finger-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30532: 19059-19378 , PASA_asmbl_30533: 20195-22170 , PASA_asmbl_30534: 18238-22170 , PASA_asmbl_30535: 19389-19741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002910_010 0.0 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
2 Hb_000649_300 0.10926582 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
3 Hb_001053_200 0.1280662427 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_008103_100 0.1307278333 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
5 Hb_000027_130 0.1339838661 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
6 Hb_000771_070 0.1355724208 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
7 Hb_002073_020 0.1375084698 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
8 Hb_004712_160 0.1403266589 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
9 Hb_005375_070 0.1421386913 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
10 Hb_000318_410 0.1437287263 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
11 Hb_000421_020 0.1477619541 - - ascorbate peroxidase [Hevea brasiliensis]
12 Hb_000402_030 0.1485353143 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
13 Hb_000008_430 0.1486127146 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
14 Hb_025236_020 0.1509794902 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
15 Hb_005539_100 0.1519304758 - - nucleoside transporter, putative [Ricinus communis]
16 Hb_000610_060 0.1546456259 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
17 Hb_003216_050 0.1552996446 - - PREDICTED: OBERON-like protein [Jatropha curcas]
18 Hb_000451_040 0.1556014553 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002534_050 0.1569216161 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
20 Hb_001951_240 0.1588192521 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002910_010 Hb_002910_010 Hb_000649_300 Hb_000649_300 Hb_002910_010--Hb_000649_300 Hb_001053_200 Hb_001053_200 Hb_002910_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_002910_010--Hb_008103_100 Hb_000027_130 Hb_000027_130 Hb_002910_010--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_002910_010--Hb_000771_070 Hb_002073_020 Hb_002073_020 Hb_002910_010--Hb_002073_020 Hb_005496_160 Hb_005496_160 Hb_000649_300--Hb_005496_160 Hb_002874_170 Hb_002874_170 Hb_000649_300--Hb_002874_170 Hb_001951_240 Hb_001951_240 Hb_000649_300--Hb_001951_240 Hb_000649_300--Hb_001053_200 Hb_000649_300--Hb_002073_020 Hb_001053_200--Hb_008103_100 Hb_001662_170 Hb_001662_170 Hb_001053_200--Hb_001662_170 Hb_001053_200--Hb_001951_240 Hb_001053_200--Hb_005496_160 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_008103_100--Hb_001662_170 Hb_012787_040 Hb_012787_040 Hb_008103_100--Hb_012787_040 Hb_004106_010 Hb_004106_010 Hb_008103_100--Hb_004106_010 Hb_003216_050 Hb_003216_050 Hb_008103_100--Hb_003216_050 Hb_000803_060 Hb_000803_060 Hb_008103_100--Hb_000803_060 Hb_000027_130--Hb_000771_070 Hb_000752_020 Hb_000752_020 Hb_000027_130--Hb_000752_020 Hb_005814_010 Hb_005814_010 Hb_000027_130--Hb_005814_010 Hb_025236_020 Hb_025236_020 Hb_000027_130--Hb_025236_020 Hb_000402_030 Hb_000402_030 Hb_000027_130--Hb_000402_030 Hb_000771_070--Hb_000752_020 Hb_000771_070--Hb_005814_010 Hb_003529_230 Hb_003529_230 Hb_000771_070--Hb_003529_230 Hb_000771_070--Hb_000402_030 Hb_000771_070--Hb_025236_020 Hb_005539_100 Hb_005539_100 Hb_002073_020--Hb_005539_100 Hb_172676_010 Hb_172676_010 Hb_002073_020--Hb_172676_010 Hb_002073_020--Hb_001951_240 Hb_002073_020--Hb_001053_200 Hb_002073_020--Hb_005496_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91491 32.3257 17.8006 5.56616 2.61767 1.65068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00759 0.704029 0.342124 6.8677 7.55626

CAGE analysis