Hb_002915_060

Information

Type -
Description -
Location Contig2915: 109519-130852
Sequence    

Annotation

kegg
ID rcu:RCOM_0436120
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012089932.1
description PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067LKZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01524 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ctr1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30571: 109705-130735 , PASA_asmbl_30572: 113077-113693 , PASA_asmbl_30574: 109705-116284 , PASA_asmbl_30577: 125551-125660
cDNA
(Sanger)
(ID:Location)		 051_J17.ab1: 109705-111306

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002915_060 0.0 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
2 Hb_001328_080 0.0702444549 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
3 Hb_007839_020 0.0730499292 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011360_050 0.0819726099 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
5 Hb_005215_020 0.0911372756 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
6 Hb_023344_150 0.0917239624 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
7 Hb_002982_020 0.0917393472 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
8 Hb_001269_380 0.0917397714 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
9 Hb_000997_180 0.0918683657 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001329_200 0.092376823 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
11 Hb_000983_050 0.0929667693 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000625_090 0.0931601548 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010407_080 0.0936450564 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
14 Hb_003747_210 0.0948882631 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
15 Hb_006006_040 0.0956704196 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
16 Hb_000110_300 0.0956881372 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
17 Hb_000802_090 0.0976027573 - - ornithine aminotransferase, putative [Ricinus communis]
18 Hb_003599_030 0.0981607702 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
19 Hb_000926_260 0.0982941684 - - conserved hypothetical protein [Ricinus communis]
20 Hb_089140_040 0.0988144887 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]

Gene co-expression network

sample Hb_002915_060 Hb_002915_060 Hb_001328_080 Hb_001328_080 Hb_002915_060--Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_002915_060--Hb_007839_020 Hb_011360_050 Hb_011360_050 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_023344_150 Hb_023344_150 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020 Hb_001328_080--Hb_007839_020 Hb_001329_200 Hb_001329_200 Hb_001328_080--Hb_001329_200 Hb_006006_040 Hb_006006_040 Hb_001328_080--Hb_006006_040 Hb_001328_080--Hb_023344_150 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_007839_020--Hb_011360_050 Hb_007839_020--Hb_001329_200 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_022425_060 Hb_022425_060 Hb_007839_020--Hb_022425_060 Hb_000802_090 Hb_000802_090 Hb_011360_050--Hb_000802_090 Hb_002232_480 Hb_002232_480 Hb_011360_050--Hb_002232_480 Hb_011360_050--Hb_002982_020 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_005215_020--Hb_006006_040 Hb_000085_450 Hb_000085_450 Hb_005215_020--Hb_000085_450 Hb_005215_020--Hb_000089_180 Hb_005215_020--Hb_007839_020 Hb_000656_150 Hb_000656_150 Hb_005215_020--Hb_000656_150 Hb_005215_020--Hb_001328_080 Hb_000983_050 Hb_000983_050 Hb_023344_150--Hb_000983_050 Hb_000731_200 Hb_000731_200 Hb_023344_150--Hb_000731_200 Hb_000023_300 Hb_000023_300 Hb_023344_150--Hb_000023_300 Hb_008748_030 Hb_008748_030 Hb_023344_150--Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_023344_150--Hb_000227_160 Hb_001269_380 Hb_001269_380 Hb_002982_020--Hb_001269_380 Hb_012092_050 Hb_012092_050 Hb_002982_020--Hb_012092_050 Hb_006452_120 Hb_006452_120 Hb_002982_020--Hb_006452_120 Hb_000778_010 Hb_000778_010 Hb_002982_020--Hb_000778_010 Hb_001221_430 Hb_001221_430 Hb_002982_020--Hb_001221_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.07033 21.2848 10.2989 20.0627 5.1117 5.90447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.69149 9.74239 6.43874 15.0763 11.0358

CAGE analysis