Hb_002917_010

Information

Type -
Description -
Location Contig2917: 33945-37351
Sequence    

Annotation

kegg
ID rcu:RCOM_0801630
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_012077398.1
description PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
swissprot
ID Q9SGP2
description Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1
trembl
ID A0A067KGR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07749 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30580: 33966-37343
cDNA
(Sanger)
(ID:Location)		 004_E20.ab1: 33967-34773

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002917_010 0.0 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
2 Hb_001357_260 0.0750309242 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_000189_260 0.085251025 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000976_020 0.0885509395 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
5 Hb_002965_020 0.0904201423 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
6 Hb_146023_010 0.0920838217 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_064398_010 0.1045829901 - - cytochrome P450, putative [Ricinus communis]
8 Hb_001288_010 0.1068495835 - - -
9 Hb_012660_010 0.1079156215 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
10 Hb_016172_010 0.1088452548 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
11 Hb_021419_060 0.1089939485 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
12 Hb_010712_020 0.1095363516 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
13 Hb_002048_010 0.1100625198 - - unknown [Lotus japonicus]
14 Hb_020332_040 0.11015106 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
15 Hb_001863_290 0.110452063 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
16 Hb_107258_010 0.1108505838 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
17 Hb_000487_170 0.1111354981 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
18 Hb_001047_250 0.1127972827 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_001442_080 0.1134258448 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
20 Hb_112082_030 0.1137679084 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002917_010 Hb_002917_010 Hb_001357_260 Hb_001357_260 Hb_002917_010--Hb_001357_260 Hb_000189_260 Hb_000189_260 Hb_002917_010--Hb_000189_260 Hb_000976_020 Hb_000976_020 Hb_002917_010--Hb_000976_020 Hb_002965_020 Hb_002965_020 Hb_002917_010--Hb_002965_020 Hb_146023_010 Hb_146023_010 Hb_002917_010--Hb_146023_010 Hb_064398_010 Hb_064398_010 Hb_002917_010--Hb_064398_010 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_001357_260--Hb_000976_020 Hb_001357_260--Hb_002965_020 Hb_004586_080 Hb_004586_080 Hb_001357_260--Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_001357_260--Hb_000327_300 Hb_020332_040 Hb_020332_040 Hb_000189_260--Hb_020332_040 Hb_000189_260--Hb_000976_020 Hb_012660_010 Hb_012660_010 Hb_000189_260--Hb_012660_010 Hb_000189_260--Hb_001357_260 Hb_002048_010 Hb_002048_010 Hb_000189_260--Hb_002048_010 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_002965_020 Hb_000976_020--Hb_020332_040 Hb_000245_140 Hb_000245_140 Hb_002965_020--Hb_000245_140 Hb_002965_020--Hb_002048_010 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_010712_020 Hb_010712_020 Hb_146023_010--Hb_010712_020 Hb_146023_010--Hb_064398_010 Hb_176979_010 Hb_176979_010 Hb_146023_010--Hb_176979_010 Hb_000939_030 Hb_000939_030 Hb_146023_010--Hb_000939_030 Hb_001047_250 Hb_001047_250 Hb_146023_010--Hb_001047_250 Hb_064398_010--Hb_010712_020 Hb_001863_290 Hb_001863_290 Hb_064398_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_064398_010--Hb_001442_080 Hb_000487_170 Hb_000487_170 Hb_064398_010--Hb_000487_170 Hb_001141_170 Hb_001141_170 Hb_064398_010--Hb_001141_170 Hb_107258_010 Hb_107258_010 Hb_064398_010--Hb_107258_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.905607 0.231251 0.17211 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.013211 0 0.0398307 6.70143 0.15551

CAGE analysis