Hb_002917_030

Information

Type -
Description -
Location Contig2917: 53861-55326
Sequence    

Annotation

kegg
ID csv:101214935
description receptor-like protein kinase 5-like
nr
ID XP_012703177.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID C5YT66
description Putative uncharacterized protein Sb08g005090 OS=Sorghum bicolor GN=Sb08g005090 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002917_030 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
2 Hb_008020_010 0.0929087347 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Jatropha curcas]
3 Hb_001489_030 0.0995451474 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
4 Hb_001596_040 0.1121792409 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
5 Hb_002917_020 0.1186104678 - - predicted protein [Arabidopsis lyrata subsp. lyrata]
6 Hb_000043_080 0.1230305612 - - lipid binding protein, putative [Ricinus communis]
7 Hb_012053_030 0.1245290632 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
8 Hb_000300_570 0.1259887382 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
9 Hb_002400_250 0.1288780007 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_005000_220 0.1289866779 - - gulonolactone oxidase, putative [Ricinus communis]
11 Hb_001951_090 0.130133099 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000322_200 0.1318050641 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
13 Hb_000265_010 0.1327774772 - - amino acid transporter, putative [Ricinus communis]
14 Hb_186298_010 0.1438917477 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_008225_100 0.1449040192 - - -
16 Hb_000030_260 0.1457136226 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
17 Hb_011970_040 0.1483566901 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000556_200 0.1483707389 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
19 Hb_004931_060 0.1488789104 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4 [Nelumbo nucifera]
20 Hb_003086_200 0.1490367646 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002917_030 Hb_002917_030 Hb_008020_010 Hb_008020_010 Hb_002917_030--Hb_008020_010 Hb_001489_030 Hb_001489_030 Hb_002917_030--Hb_001489_030 Hb_001596_040 Hb_001596_040 Hb_002917_030--Hb_001596_040 Hb_002917_020 Hb_002917_020 Hb_002917_030--Hb_002917_020 Hb_000043_080 Hb_000043_080 Hb_002917_030--Hb_000043_080 Hb_012053_030 Hb_012053_030 Hb_002917_030--Hb_012053_030 Hb_001951_090 Hb_001951_090 Hb_008020_010--Hb_001951_090 Hb_008020_010--Hb_001596_040 Hb_001952_110 Hb_001952_110 Hb_008020_010--Hb_001952_110 Hb_008225_100 Hb_008225_100 Hb_008020_010--Hb_008225_100 Hb_008020_010--Hb_002917_020 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_000265_010 Hb_000265_010 Hb_001489_030--Hb_000265_010 Hb_001489_030--Hb_012053_030 Hb_002171_070 Hb_002171_070 Hb_001596_040--Hb_002171_070 Hb_012019_020 Hb_012019_020 Hb_001596_040--Hb_012019_020 Hb_003086_200 Hb_003086_200 Hb_001596_040--Hb_003086_200 Hb_004931_060 Hb_004931_060 Hb_001596_040--Hb_004931_060 Hb_000556_200 Hb_000556_200 Hb_001596_040--Hb_000556_200 Hb_002917_020--Hb_004931_060 Hb_186298_010 Hb_186298_010 Hb_002917_020--Hb_186298_010 Hb_005550_070 Hb_005550_070 Hb_002917_020--Hb_005550_070 Hb_011628_030 Hb_011628_030 Hb_002917_020--Hb_011628_030 Hb_047163_010 Hb_047163_010 Hb_002917_020--Hb_047163_010 Hb_002917_020--Hb_001951_090 Hb_000043_080--Hb_003086_200 Hb_000043_080--Hb_000556_200 Hb_012395_070 Hb_012395_070 Hb_000043_080--Hb_012395_070 Hb_002007_230 Hb_002007_230 Hb_000043_080--Hb_002007_230 Hb_000043_080--Hb_000265_010 Hb_012053_030--Hb_000300_570 Hb_012053_030--Hb_000265_010 Hb_008053_070 Hb_008053_070 Hb_012053_030--Hb_008053_070 Hb_000185_060 Hb_000185_060 Hb_012053_030--Hb_000185_060 Hb_012053_030--Hb_003086_200 Hb_007666_040 Hb_007666_040 Hb_012053_030--Hb_007666_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183948 17.4821 2.33124 1.14425 0.0160707 0.0452107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117494 0.184849 0.34438 20.5127 0.319312

CAGE analysis