Hb_002918_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2918: 23616-25118
Sequence    

Annotation

kegg
ID rcu:RCOM_1674060
description zinc finger protein, putative
nr
ID XP_012091630.1
description PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
swissprot
ID Q9FZA4
description Dof zinc finger protein DOF1.4 OS=Arabidopsis thaliana GN=DOF1.4 PE=2 SV=1
trembl
ID A0A067JDZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21459 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_020 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
2 Hb_000261_320 0.1653576045 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_001091_020 0.1703019592 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_005880_010 0.1758428691 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
5 Hb_001496_120 0.1788066769 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
6 Hb_159411_010 0.1880166004 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_136880_010 0.188189662 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_000703_180 0.1884965674 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
9 Hb_000197_230 0.1931841735 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
10 Hb_000383_020 0.1943496267 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_001488_280 0.1992420327 - - hypothetical protein JCGZ_19947 [Jatropha curcas]
12 Hb_002739_060 0.2003404361 - - -
13 Hb_002003_040 0.2008171306 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
14 Hb_000418_150 0.2009795012 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_001085_230 0.2038879307 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]
16 Hb_000574_370 0.2046152968 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
17 Hb_000808_220 0.205931325 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
18 Hb_002217_390 0.2065342691 - - PREDICTED: galactokinase [Jatropha curcas]
19 Hb_083242_020 0.2065745261 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
20 Hb_001677_230 0.2080376312 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002918_020 Hb_002918_020 Hb_000261_320 Hb_000261_320 Hb_002918_020--Hb_000261_320 Hb_001091_020 Hb_001091_020 Hb_002918_020--Hb_001091_020 Hb_005880_010 Hb_005880_010 Hb_002918_020--Hb_005880_010 Hb_001496_120 Hb_001496_120 Hb_002918_020--Hb_001496_120 Hb_159411_010 Hb_159411_010 Hb_002918_020--Hb_159411_010 Hb_136880_010 Hb_136880_010 Hb_002918_020--Hb_136880_010 Hb_002003_040 Hb_002003_040 Hb_000261_320--Hb_002003_040 Hb_002833_020 Hb_002833_020 Hb_000261_320--Hb_002833_020 Hb_000261_320--Hb_005880_010 Hb_001391_100 Hb_001391_100 Hb_000261_320--Hb_001391_100 Hb_073973_020 Hb_073973_020 Hb_000261_320--Hb_073973_020 Hb_001268_300 Hb_001268_300 Hb_000261_320--Hb_001268_300 Hb_117168_010 Hb_117168_010 Hb_001091_020--Hb_117168_010 Hb_000313_370 Hb_000313_370 Hb_001091_020--Hb_000313_370 Hb_001091_020--Hb_005880_010 Hb_000141_010 Hb_000141_010 Hb_001091_020--Hb_000141_010 Hb_002218_070 Hb_002218_070 Hb_001091_020--Hb_002218_070 Hb_002660_040 Hb_002660_040 Hb_001091_020--Hb_002660_040 Hb_008175_030 Hb_008175_030 Hb_005880_010--Hb_008175_030 Hb_005880_010--Hb_002833_020 Hb_005880_010--Hb_002660_040 Hb_000778_020 Hb_000778_020 Hb_005880_010--Hb_000778_020 Hb_001369_160 Hb_001369_160 Hb_005880_010--Hb_001369_160 Hb_000221_180 Hb_000221_180 Hb_001496_120--Hb_000221_180 Hb_000418_150 Hb_000418_150 Hb_001496_120--Hb_000418_150 Hb_001496_120--Hb_073973_020 Hb_001307_200 Hb_001307_200 Hb_001496_120--Hb_001307_200 Hb_000438_020 Hb_000438_020 Hb_001496_120--Hb_000438_020 Hb_002888_060 Hb_002888_060 Hb_001496_120--Hb_002888_060 Hb_000197_230 Hb_000197_230 Hb_159411_010--Hb_000197_230 Hb_159411_010--Hb_005880_010 Hb_159411_010--Hb_001369_160 Hb_000083_130 Hb_000083_130 Hb_159411_010--Hb_000083_130 Hb_146510_010 Hb_146510_010 Hb_159411_010--Hb_146510_010 Hb_001488_280 Hb_001488_280 Hb_159411_010--Hb_001488_280 Hb_121992_010 Hb_121992_010 Hb_136880_010--Hb_121992_010 Hb_001485_010 Hb_001485_010 Hb_136880_010--Hb_001485_010 Hb_012788_010 Hb_012788_010 Hb_136880_010--Hb_012788_010 Hb_001304_130 Hb_001304_130 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_151706_010 Hb_151706_010 Hb_136880_010--Hb_151706_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.06552 24.8903 8.71732 7.84545 2.95404 6.71083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0291005 0 34.2956 23.8268

CAGE analysis