Hb_002918_030

Information

Type -
Description -
Location Contig2918: 29668-41354
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08500g
description hypothetical protein
nr
ID XP_012091632.1
description PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_030 0.0 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
2 Hb_003125_160 0.0683680455 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
3 Hb_006120_070 0.0719830242 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
4 Hb_000174_110 0.0724637607 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
5 Hb_000260_100 0.0725022371 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006620_020 0.0751995266 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
7 Hb_000230_560 0.0753356333 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
8 Hb_001983_030 0.0787278254 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
9 Hb_001433_070 0.0789151874 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
10 Hb_027043_020 0.0789388057 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001329_130 0.0790410798 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004109_280 0.0803971795 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
13 Hb_000913_050 0.0808045179 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
14 Hb_002110_230 0.0808866476 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
15 Hb_024847_010 0.082755046 - - UPF0586 C9orf41-like protein [Medicago truncatula]
16 Hb_001579_230 0.0836152139 - - PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]
17 Hb_000367_130 0.0852722626 - - conserved hypothetical protein [Ricinus communis]
18 Hb_156973_010 0.0872914072 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006064_010 0.0874940144 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
20 Hb_000836_170 0.0878568224 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002918_030 Hb_002918_030 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_006120_070 Hb_006120_070 Hb_002918_030--Hb_006120_070 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_003125_160--Hb_000230_560 Hb_156973_010 Hb_156973_010 Hb_003125_160--Hb_156973_010 Hb_003665_060 Hb_003665_060 Hb_003125_160--Hb_003665_060 Hb_004182_040 Hb_004182_040 Hb_003125_160--Hb_004182_040 Hb_001369_180 Hb_001369_180 Hb_003125_160--Hb_001369_180 Hb_005697_060 Hb_005697_060 Hb_006120_070--Hb_005697_060 Hb_024847_010 Hb_024847_010 Hb_006120_070--Hb_024847_010 Hb_001512_060 Hb_001512_060 Hb_006120_070--Hb_001512_060 Hb_000959_210 Hb_000959_210 Hb_006120_070--Hb_000959_210 Hb_001329_290 Hb_001329_290 Hb_006120_070--Hb_001329_290 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_000174_110--Hb_006620_020 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_054865_100 Hb_054865_100 Hb_000174_110--Hb_054865_100 Hb_002175_030 Hb_002175_030 Hb_000174_110--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_000174_110--Hb_001486_340 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000260_100--Hb_002997_080 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_006620_020--Hb_001926_030 Hb_006620_020--Hb_054865_100 Hb_000230_560--Hb_002997_080 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000883_020 Hb_000883_020 Hb_000230_560--Hb_000883_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5022 1.37735 3.61561 2.34847 4.52157 4.30478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84099 3.60882 1.79662 2.34979 2.04967

CAGE analysis