Hb_002918_070

Information

Type -
Description -
Location Contig2918: 74046-80074
Sequence    

Annotation

kegg
ID pop:POPTR_0011s05530g
description hypothetical protein
nr
ID XP_006377392.1
description hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
swissprot
ID Q9FKW0
description Putative E3 ubiquitin-protein ligase RING1a OS=Arabidopsis thaliana GN=RING1A PE=1 SV=2
trembl
ID B9N3I0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s05530g PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1a isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30596: 74216-78116 , PASA_asmbl_30598: 78229-79190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_070 0.0 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
2 Hb_005000_270 0.0640104725 - - unnamed protein product [Vitis vinifera]
3 Hb_000211_090 0.0687910157 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
4 Hb_000212_280 0.0833777388 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
5 Hb_001486_120 0.0840611532 - - PREDICTED: importin-5-like [Jatropha curcas]
6 Hb_000779_040 0.0850393126 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
7 Hb_000134_360 0.0910479786 - - PREDICTED: protein gar2 [Jatropha curcas]
8 Hb_000890_220 0.0920127563 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
9 Hb_001582_030 0.0920289164 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
10 Hb_002374_150 0.0925495853 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
11 Hb_174865_050 0.093337109 - - PREDICTED: neuroguidin [Jatropha curcas]
12 Hb_113216_010 0.0937717617 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
13 Hb_000792_110 0.0945367479 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
14 Hb_000016_180 0.0946897842 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
15 Hb_010189_010 0.0955307992 - - -
16 Hb_000608_340 0.0986055915 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
17 Hb_000213_060 0.1015824893 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
18 Hb_003666_050 0.1033820514 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
19 Hb_000185_090 0.1051034653 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
20 Hb_007668_020 0.105977286 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_070 Hb_002918_070 Hb_005000_270 Hb_005000_270 Hb_002918_070--Hb_005000_270 Hb_000211_090 Hb_000211_090 Hb_002918_070--Hb_000211_090 Hb_000212_280 Hb_000212_280 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_000779_040 Hb_000779_040 Hb_002918_070--Hb_000779_040 Hb_000134_360 Hb_000134_360 Hb_002918_070--Hb_000134_360 Hb_001582_030 Hb_001582_030 Hb_005000_270--Hb_001582_030 Hb_005000_270--Hb_000134_360 Hb_005129_050 Hb_005129_050 Hb_005000_270--Hb_005129_050 Hb_005000_270--Hb_000212_280 Hb_003716_020 Hb_003716_020 Hb_005000_270--Hb_003716_020 Hb_000211_090--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_090--Hb_000792_110 Hb_000890_220 Hb_000890_220 Hb_000211_090--Hb_000890_220 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_003673_020 Hb_003673_020 Hb_000211_090--Hb_003673_020 Hb_025048_040 Hb_025048_040 Hb_000212_280--Hb_025048_040 Hb_113216_010 Hb_113216_010 Hb_000212_280--Hb_113216_010 Hb_002374_150 Hb_002374_150 Hb_000212_280--Hb_002374_150 Hb_000331_480 Hb_000331_480 Hb_000212_280--Hb_000331_480 Hb_005028_010 Hb_005028_010 Hb_000212_280--Hb_005028_010 Hb_000136_150 Hb_000136_150 Hb_001486_120--Hb_000136_150 Hb_001486_120--Hb_000134_360 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_000317_440 Hb_000317_440 Hb_001486_120--Hb_000317_440 Hb_009421_030 Hb_009421_030 Hb_001486_120--Hb_009421_030 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_000779_040--Hb_000890_220 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000779_040--Hb_003673_020 Hb_000631_150 Hb_000631_150 Hb_000134_360--Hb_000631_150 Hb_000134_360--Hb_008528_010 Hb_000003_790 Hb_000003_790 Hb_000134_360--Hb_000003_790 Hb_000849_100 Hb_000849_100 Hb_000134_360--Hb_000849_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.7207 7.88257 2.30023 4.25637 29.4765 40.728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88663 2.62482 5.34659 6.55061 3.23336

CAGE analysis