Hb_002918_120

Information

Type -
Description -
Location Contig2918: 114977-121317
Sequence    

Annotation

kegg
ID rcu:RCOM_1673790
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002509445.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ZQQ7
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=3 SV=1
trembl
ID B9RBB1
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1673790 PE=4 SV=1
Gene Ontology
ID GO:0005768
description receptor like protein 4 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30602: 119778-120058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_120 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004446_060 0.0812764129 - - neutral/alkaline invertase [Manihot esculenta]
3 Hb_001195_740 0.0861156717 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
4 Hb_000834_220 0.0875377607 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
5 Hb_005144_060 0.0877117486 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
6 Hb_001437_260 0.0960704374 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
7 Hb_021346_020 0.0968272941 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
8 Hb_000941_010 0.1004614666 - - hypothetical protein RCOM_0504460 [Ricinus communis]
9 Hb_001157_190 0.1004666692 - - PREDICTED: protein YLS3 [Jatropha curcas]
10 Hb_001135_010 0.1054954658 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
11 Hb_015001_030 0.1072426213 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
12 Hb_000732_220 0.1106665047 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
13 Hb_000731_280 0.1109051769 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
14 Hb_001104_020 0.1138583075 - - DNA binding protein, putative [Ricinus communis]
15 Hb_002805_180 0.1144112608 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005993_030 0.1150909788 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
17 Hb_000866_040 0.1200220233 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
18 Hb_001597_030 0.1217619642 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
19 Hb_001832_140 0.1235497749 - - endomembrane protein 70 family protein [Medicago truncatula]
20 Hb_001638_150 0.1257825985 - - acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002918_120 Hb_002918_120 Hb_004446_060 Hb_004446_060 Hb_002918_120--Hb_004446_060 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_021346_020 Hb_021346_020 Hb_002918_120--Hb_021346_020 Hb_004446_060--Hb_001437_260 Hb_007007_130 Hb_007007_130 Hb_004446_060--Hb_007007_130 Hb_002851_070 Hb_002851_070 Hb_004446_060--Hb_002851_070 Hb_004446_060--Hb_021346_020 Hb_004832_010 Hb_004832_010 Hb_004446_060--Hb_004832_010 Hb_001157_190 Hb_001157_190 Hb_001195_740--Hb_001157_190 Hb_008143_060 Hb_008143_060 Hb_001195_740--Hb_008143_060 Hb_001832_140 Hb_001832_140 Hb_001195_740--Hb_001832_140 Hb_000696_250 Hb_000696_250 Hb_001195_740--Hb_000696_250 Hb_000696_030 Hb_000696_030 Hb_001195_740--Hb_000696_030 Hb_001440_010 Hb_001440_010 Hb_000834_220--Hb_001440_010 Hb_000834_220--Hb_005144_060 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_002805_180 Hb_002805_180 Hb_005144_060--Hb_002805_180 Hb_019570_010 Hb_019570_010 Hb_005144_060--Hb_019570_010 Hb_004592_010 Hb_004592_010 Hb_005144_060--Hb_004592_010 Hb_001104_150 Hb_001104_150 Hb_005144_060--Hb_001104_150 Hb_000941_010 Hb_000941_010 Hb_001437_260--Hb_000941_010 Hb_001437_260--Hb_002805_180 Hb_001437_260--Hb_004832_010 Hb_001104_020 Hb_001104_020 Hb_001437_260--Hb_001104_020 Hb_015001_030 Hb_015001_030 Hb_021346_020--Hb_015001_030 Hb_014250_010 Hb_014250_010 Hb_021346_020--Hb_014250_010 Hb_005766_010 Hb_005766_010 Hb_021346_020--Hb_005766_010 Hb_000616_010 Hb_000616_010 Hb_021346_020--Hb_000616_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204795 1.68016 9.63672 7.07053 0.0951835 0.146368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.166385 0.0145472 0.0554157 5.923 4.07772

CAGE analysis