Hb_002918_130

Information

Type transcription factor
Description TF Family: ERF
Location Contig2918: 123524-124009
Sequence    

Annotation

kegg
ID rcu:RCOM_1673780
description Ethylene-responsive transcription factor, putative
nr
ID XP_012091650.1
description PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
swissprot
ID Q94ID6
description Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1
trembl
ID A0A067JE07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21469 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30604: 123387-124166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_130 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
2 Hb_000112_100 0.209562647 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_007849_010 0.2145152667 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_020178_010 0.2267629797 transcription factor TF Family: MYB-related PREDICTED: myb-related protein A-like [Jatropha curcas]
5 Hb_006503_010 0.2343880859 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_009736_010 0.2533351071 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007101_290 0.257548376 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
8 Hb_001703_110 0.2577702336 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
9 Hb_000216_010 0.2604881956 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
10 Hb_000359_320 0.2605305296 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
11 Hb_011099_010 0.2639370206 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_001318_290 0.2641955148 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_000836_230 0.2663617457 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
14 Hb_033642_050 0.2690689481 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 4-like [Jatropha curcas]
15 Hb_004724_450 0.2756102499 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
16 Hb_000007_430 0.2772340111 - - hypothetical protein POPTR_0010s14280g [Populus trichocarpa]
17 Hb_000567_180 0.2783976985 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
18 Hb_009775_040 0.2790654375 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
19 Hb_002571_040 0.280329465 - - hypothetical protein RCOM_1321060 [Ricinus communis]
20 Hb_009545_020 0.2817398233 - - PREDICTED: uncharacterized protein LOC105632008 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_130 Hb_002918_130 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_007849_010 Hb_007849_010 Hb_002918_130--Hb_007849_010 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_006503_010 Hb_006503_010 Hb_002918_130--Hb_006503_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010 Hb_007101_290 Hb_007101_290 Hb_002918_130--Hb_007101_290 Hb_000112_100--Hb_020178_010 Hb_000953_080 Hb_000953_080 Hb_000112_100--Hb_000953_080 Hb_005946_120 Hb_005946_120 Hb_000112_100--Hb_005946_120 Hb_000031_330 Hb_000031_330 Hb_000112_100--Hb_000031_330 Hb_000007_430 Hb_000007_430 Hb_000112_100--Hb_000007_430 Hb_003120_040 Hb_003120_040 Hb_007849_010--Hb_003120_040 Hb_007849_010--Hb_000007_430 Hb_000984_260 Hb_000984_260 Hb_007849_010--Hb_000984_260 Hb_001675_030 Hb_001675_030 Hb_007849_010--Hb_001675_030 Hb_000599_310 Hb_000599_310 Hb_007849_010--Hb_000599_310 Hb_001832_050 Hb_001832_050 Hb_020178_010--Hb_001832_050 Hb_000836_230 Hb_000836_230 Hb_020178_010--Hb_000836_230 Hb_020178_010--Hb_007849_010 Hb_009775_040 Hb_009775_040 Hb_020178_010--Hb_009775_040 Hb_000216_010 Hb_000216_010 Hb_006503_010--Hb_000216_010 Hb_006503_010--Hb_009775_040 Hb_143629_030 Hb_143629_030 Hb_006503_010--Hb_143629_030 Hb_001470_070 Hb_001470_070 Hb_006503_010--Hb_001470_070 Hb_002675_200 Hb_002675_200 Hb_006503_010--Hb_002675_200 Hb_009545_020 Hb_009545_020 Hb_009736_010--Hb_009545_020 Hb_004195_090 Hb_004195_090 Hb_009736_010--Hb_004195_090 Hb_031527_060 Hb_031527_060 Hb_009736_010--Hb_031527_060 Hb_001170_010 Hb_001170_010 Hb_009736_010--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_009736_010--Hb_004724_450 Hb_124315_030 Hb_124315_030 Hb_009736_010--Hb_124315_030 Hb_001703_110 Hb_001703_110 Hb_007101_290--Hb_001703_110 Hb_006420_090 Hb_006420_090 Hb_007101_290--Hb_006420_090 Hb_003960_020 Hb_003960_020 Hb_007101_290--Hb_003960_020 Hb_000032_580 Hb_000032_580 Hb_007101_290--Hb_000032_580 Hb_008479_020 Hb_008479_020 Hb_007101_290--Hb_008479_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.39397 8.64331 4.36969 10.4088 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 12.709 0 13.5443 0.410525

CAGE analysis