Hb_002918_140

Information

Type -
Description -
Location Contig2918: 133455-137126
Sequence    

Annotation

kegg
ID rcu:RCOM_1673770
description fad NAD binding oxidoreductases, putative
nr
ID XP_012091651.1
description PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
swissprot
ID Q9FN32
description Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1
trembl
ID B9RBA9
description Protein yippee-like OS=Ricinus communis GN=RCOM_1673770 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30605: 133478-137158
cDNA
(Sanger)
(ID:Location)		 029_M20.ab1: 133795-137158

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_140 0.0 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
2 Hb_034585_050 0.0849854945 - - -
3 Hb_001863_420 0.096072371 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
4 Hb_001386_050 0.1049635235 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
5 Hb_001017_070 0.1078890656 - - conserved hypothetical protein [Ricinus communis]
6 Hb_017862_010 0.1135232882 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
7 Hb_000676_240 0.1170385127 - - thioredoxin H-type 2 [Hevea brasiliensis]
8 Hb_001052_030 0.120338568 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
9 Hb_000563_240 0.1221563885 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
10 Hb_005505_020 0.1239776259 - - Potassium channel AKT1, putative [Ricinus communis]
11 Hb_001369_400 0.1258540082 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
12 Hb_007497_030 0.1275901633 - - mutt domain protein, putative [Ricinus communis]
13 Hb_146225_010 0.1277495353 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
14 Hb_003086_060 0.1292392867 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
15 Hb_005590_020 0.1304115386 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
16 Hb_076626_010 0.1337190623 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007575_070 0.1338745746 - - Histone H3.2 [Glycine soja]
18 Hb_011689_050 0.134873143 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
19 Hb_006738_010 0.1349292784 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
20 Hb_002326_180 0.1363091327 - - Protein Z, putative [Ricinus communis]

Gene co-expression network

sample Hb_002918_140 Hb_002918_140 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_001863_420 Hb_001863_420 Hb_002918_140--Hb_001863_420 Hb_001386_050 Hb_001386_050 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_017862_010 Hb_017862_010 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240 Hb_006738_010 Hb_006738_010 Hb_034585_050--Hb_006738_010 Hb_010594_030 Hb_010594_030 Hb_034585_050--Hb_010594_030 Hb_003043_120 Hb_003043_120 Hb_034585_050--Hb_003043_120 Hb_011245_020 Hb_011245_020 Hb_034585_050--Hb_011245_020 Hb_034585_050--Hb_017862_010 Hb_001863_420--Hb_001386_050 Hb_001159_200 Hb_001159_200 Hb_001863_420--Hb_001159_200 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001369_400 Hb_001369_400 Hb_001863_420--Hb_001369_400 Hb_003086_060 Hb_003086_060 Hb_001863_420--Hb_003086_060 Hb_008948_050 Hb_008948_050 Hb_001386_050--Hb_008948_050 Hb_000878_020 Hb_000878_020 Hb_001386_050--Hb_000878_020 Hb_002344_070 Hb_002344_070 Hb_001386_050--Hb_002344_070 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_006588_080 Hb_006588_080 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_000881_080 Hb_000881_080 Hb_001017_070--Hb_000881_080 Hb_002248_100 Hb_002248_100 Hb_001017_070--Hb_002248_100 Hb_007943_140 Hb_007943_140 Hb_001017_070--Hb_007943_140 Hb_000635_080 Hb_000635_080 Hb_001017_070--Hb_000635_080 Hb_183086_040 Hb_183086_040 Hb_001017_070--Hb_183086_040 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_000069_100 Hb_000069_100 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_006831_030 Hb_006831_030 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090 Hb_002326_180 Hb_002326_180 Hb_000676_240--Hb_002326_180 Hb_000676_240--Hb_017862_010 Hb_005841_040 Hb_005841_040 Hb_000676_240--Hb_005841_040 Hb_002045_230 Hb_002045_230 Hb_000676_240--Hb_002045_230 Hb_000676_240--Hb_001123_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.8857 36.3998 17.9619 20.9167 89.9432 80.8823
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
274.457 640.112 247.784 60.2928 55.4053

CAGE analysis