Hb_002918_200

Information

Type -
Description -
Location Contig2918: 191483-196025
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30614: 192719-195610 , PASA_asmbl_30616: 194628-194873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_200 0.0 - - -
2 Hb_004837_140 0.0512693905 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
3 Hb_004108_230 0.0522387124 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
4 Hb_000834_270 0.0598376023 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
5 Hb_003175_040 0.0624191826 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
6 Hb_000170_010 0.066726699 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_002027_210 0.067026961 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
8 Hb_003376_030 0.0676192878 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
9 Hb_008289_060 0.0687804676 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
10 Hb_000030_100 0.0696548632 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
11 Hb_000648_060 0.0718048358 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
12 Hb_000120_750 0.0722703429 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
13 Hb_000134_330 0.0725359044 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
14 Hb_000146_020 0.0729315888 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
15 Hb_008878_030 0.0737441686 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
16 Hb_003927_130 0.0749974527 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
17 Hb_011465_040 0.0752818051 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
18 Hb_012753_160 0.0756304463 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_003455_040 0.0764875648 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
20 Hb_007479_020 0.0765873963 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_200 Hb_002918_200 Hb_004837_140 Hb_004837_140 Hb_002918_200--Hb_004837_140 Hb_004108_230 Hb_004108_230 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_004837_140--Hb_000170_010 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_004108_230--Hb_003175_040 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_000146_020 Hb_000146_020 Hb_000834_270--Hb_000146_020 Hb_000834_270--Hb_002963_010 Hb_012675_060 Hb_012675_060 Hb_000834_270--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_000834_270--Hb_010080_090 Hb_001722_100 Hb_001722_100 Hb_000834_270--Hb_001722_100 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_000170_010--Hb_002963_010 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_000170_010--Hb_012338_010 Hb_000173_220 Hb_000173_220 Hb_002027_210--Hb_000173_220 Hb_003376_030 Hb_003376_030 Hb_002027_210--Hb_003376_030 Hb_002027_210--Hb_005432_030 Hb_002027_210--Hb_000146_020 Hb_001191_090 Hb_001191_090 Hb_002027_210--Hb_001191_090 Hb_003455_040 Hb_003455_040 Hb_002027_210--Hb_003455_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.20692 1.1151 1.53678 1.77834 3.99131 4.34278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.26041 10.2518 7.32562 2.71975 2.0637

CAGE analysis