Hb_002918_230

Information

Type -
Description -
Location Contig2918: 215350-216093
Sequence    

Annotation

kegg
ID pmum:103325843
description probable glutathione S-transferase parC
nr
ID XP_012461817.1
description PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
swissprot
ID Q9ZRW8
description Glutathione S-transferase U19 OS=Arabidopsis thaliana GN=GSTU19 PE=2 SV=1
trembl
ID A0A0D2VGZ2
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G177200 PE=4 SV=1
Gene Ontology
ID GO:0016829
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30624: 215637-215999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_230 0.0 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
2 Hb_001355_130 0.1760028934 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
3 Hb_004800_170 0.1858481514 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
4 Hb_003096_050 0.2070481655 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000056_330 0.2167891894 - - unnamed protein product [Vitis vinifera]
6 Hb_001190_060 0.2261263682 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
7 Hb_000975_150 0.226851929 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
8 Hb_158092_060 0.2409909197 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
9 Hb_007439_010 0.2435365493 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
10 Hb_000471_080 0.2447475942 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
11 Hb_000879_190 0.2531513319 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002057_010 0.2584901268 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_006275_010 0.2591580295 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
14 Hb_000140_190 0.2609089888 - - acc synthase, putative [Ricinus communis]
15 Hb_004976_050 0.2612098082 - - -
16 Hb_005000_310 0.2620504512 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
17 Hb_000140_160 0.2642395256 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
18 Hb_002311_240 0.268149684 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
19 Hb_000011_430 0.268452414 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000816_120 0.271182768 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_230 Hb_002918_230 Hb_001355_130 Hb_001355_130 Hb_002918_230--Hb_001355_130 Hb_004800_170 Hb_004800_170 Hb_002918_230--Hb_004800_170 Hb_003096_050 Hb_003096_050 Hb_002918_230--Hb_003096_050 Hb_000056_330 Hb_000056_330 Hb_002918_230--Hb_000056_330 Hb_001190_060 Hb_001190_060 Hb_002918_230--Hb_001190_060 Hb_000975_150 Hb_000975_150 Hb_002918_230--Hb_000975_150 Hb_094437_060 Hb_094437_060 Hb_001355_130--Hb_094437_060 Hb_183623_010 Hb_183623_010 Hb_001355_130--Hb_183623_010 Hb_005873_010 Hb_005873_010 Hb_001355_130--Hb_005873_010 Hb_000879_190 Hb_000879_190 Hb_001355_130--Hb_000879_190 Hb_004976_050 Hb_004976_050 Hb_001355_130--Hb_004976_050 Hb_004800_170--Hb_000975_150 Hb_004800_170--Hb_000879_190 Hb_024621_030 Hb_024621_030 Hb_004800_170--Hb_024621_030 Hb_002006_140 Hb_002006_140 Hb_004800_170--Hb_002006_140 Hb_004800_170--Hb_000056_330 Hb_003096_050--Hb_001190_060 Hb_003096_050--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_003096_050--Hb_007894_250 Hb_000816_120 Hb_000816_120 Hb_003096_050--Hb_000816_120 Hb_002311_240 Hb_002311_240 Hb_003096_050--Hb_002311_240 Hb_003096_050--Hb_000975_150 Hb_000926_130 Hb_000926_130 Hb_000056_330--Hb_000926_130 Hb_000056_330--Hb_007894_250 Hb_000056_330--Hb_001190_060 Hb_007072_020 Hb_007072_020 Hb_000056_330--Hb_007072_020 Hb_000056_330--Hb_000975_150 Hb_001190_060--Hb_000816_120 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_001190_060--Hb_002311_240 Hb_000975_150--Hb_007894_250 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_000975_150--Hb_001190_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0693938 1.28334 2.08749 5.13042 0 0.092312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8948 5.10116 3.48638 56.8673 0.249328

CAGE analysis