Hb_002918_280

Information

Type -
Description -
Location Contig2918: 240627-241091
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04800g
description POPTRDRAFT_758858; hypothetical protein
nr
ID XP_002305116.1
description hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H2R0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30626: 241880-244856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_280 0.0 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
2 Hb_010883_210 0.1023699101 - - PREDICTED: selenoprotein K [Jatropha curcas]
3 Hb_084934_010 0.1201173691 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
4 Hb_005031_070 0.1214664795 - - RecName: Full=Major latex allergen Hev b 5; AltName: Allergen=Hev b 5 [Hevea brasiliensis]
5 Hb_000221_100 0.1258280474 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
6 Hb_000680_150 0.1293624144 - - PREDICTED: protein STU1-like [Jatropha curcas]
7 Hb_001386_130 0.133588794 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
8 Hb_000752_060 0.1367068177 - - expressed protein, putative [Ricinus communis]
9 Hb_000331_310 0.1382038513 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
10 Hb_004204_030 0.1433547493 - - unknown [Populus trichocarpa]
11 Hb_036369_010 0.1460472354 - - -
12 Hb_027472_090 0.1464226074 - - -
13 Hb_001514_020 0.147002181 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
14 Hb_002783_230 0.1484506834 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_004607_140 0.1487651155 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
16 Hb_007992_030 0.1502657633 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
17 Hb_007625_020 0.1516243882 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
18 Hb_000977_140 0.1519857533 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
19 Hb_004012_010 0.153067756 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
20 Hb_006189_010 0.1537304607 - - -

Gene co-expression network

sample Hb_002918_280 Hb_002918_280 Hb_010883_210 Hb_010883_210 Hb_002918_280--Hb_010883_210 Hb_084934_010 Hb_084934_010 Hb_002918_280--Hb_084934_010 Hb_005031_070 Hb_005031_070 Hb_002918_280--Hb_005031_070 Hb_000221_100 Hb_000221_100 Hb_002918_280--Hb_000221_100 Hb_000680_150 Hb_000680_150 Hb_002918_280--Hb_000680_150 Hb_001386_130 Hb_001386_130 Hb_002918_280--Hb_001386_130 Hb_000768_050 Hb_000768_050 Hb_010883_210--Hb_000768_050 Hb_003106_070 Hb_003106_070 Hb_010883_210--Hb_003106_070 Hb_003688_100 Hb_003688_100 Hb_010883_210--Hb_003688_100 Hb_010449_020 Hb_010449_020 Hb_010883_210--Hb_010449_020 Hb_005489_130 Hb_005489_130 Hb_010883_210--Hb_005489_130 Hb_011472_040 Hb_011472_040 Hb_084934_010--Hb_011472_040 Hb_006189_010 Hb_006189_010 Hb_084934_010--Hb_006189_010 Hb_003086_110 Hb_003086_110 Hb_084934_010--Hb_003086_110 Hb_157854_010 Hb_157854_010 Hb_084934_010--Hb_157854_010 Hb_118977_020 Hb_118977_020 Hb_084934_010--Hb_118977_020 Hb_030312_040 Hb_030312_040 Hb_084934_010--Hb_030312_040 Hb_004223_230 Hb_004223_230 Hb_005031_070--Hb_004223_230 Hb_004012_010 Hb_004012_010 Hb_005031_070--Hb_004012_010 Hb_002783_230 Hb_002783_230 Hb_005031_070--Hb_002783_230 Hb_000339_070 Hb_000339_070 Hb_005031_070--Hb_000339_070 Hb_169246_010 Hb_169246_010 Hb_005031_070--Hb_169246_010 Hb_145761_010 Hb_145761_010 Hb_000221_100--Hb_145761_010 Hb_007625_020 Hb_007625_020 Hb_000221_100--Hb_007625_020 Hb_007451_030 Hb_007451_030 Hb_000221_100--Hb_007451_030 Hb_000977_140 Hb_000977_140 Hb_000221_100--Hb_000977_140 Hb_000221_100--Hb_000680_150 Hb_000680_150--Hb_001386_130 Hb_000590_090 Hb_000590_090 Hb_000680_150--Hb_000590_090 Hb_000680_150--Hb_007451_030 Hb_002681_040 Hb_002681_040 Hb_000680_150--Hb_002681_040 Hb_001514_020 Hb_001514_020 Hb_000680_150--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_000680_150--Hb_001493_100 Hb_001386_130--Hb_000590_090 Hb_004813_010 Hb_004813_010 Hb_001386_130--Hb_004813_010 Hb_001386_130--Hb_001514_020 Hb_001386_130--Hb_001493_100 Hb_116701_020 Hb_116701_020 Hb_001386_130--Hb_116701_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.3872 11.0365 0.559677 4.18471 31.7554 26.3063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9045 38.8259 7.3471 6.98409 0.656486

CAGE analysis