Hb_002920_010

Information

Type -
Description -
Location Contig2920: 34210-36544
Sequence    

Annotation

kegg
ID rcu:RCOM_0891620
description Sulfiredoxin-1, putative
nr
ID XP_011029924.1
description PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
swissprot
ID Q8GY89
description Sulfiredoxin, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SRX PE=1 SV=1
trembl
ID B9SCC3
description Sulfiredoxin-1, putative OS=Ricinus communis GN=RCOM_0891620 PE=4 SV=1
Gene Ontology
ID GO:0032542
description chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30634: 33886-34332 , PASA_asmbl_30635: 34495-36456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002920_010 0.0 - - PREDICTED: sulfiredoxin, chloroplastic/mitochondrial [Populus euphratica]
2 Hb_150440_010 0.1246580507 - - -
3 Hb_004631_170 0.1642766186 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000603_020 0.1719493655 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
5 Hb_000424_030 0.1769701457 - - conserved hypothetical protein [Ricinus communis]
6 Hb_014497_040 0.184981132 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
7 Hb_098795_030 0.1888488511 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
8 Hb_034726_010 0.1909763958 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_000177_110 0.194151085 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
10 Hb_002272_200 0.1962184686 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
11 Hb_084147_010 0.1962585204 - - amino acid transporter, putative [Ricinus communis]
12 Hb_003001_130 0.1967982587 - - conserved hypothetical protein [Ricinus communis]
13 Hb_020586_010 0.1969603284 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
14 Hb_003207_150 0.1994702723 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
15 Hb_000271_220 0.2002138034 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
16 Hb_003470_110 0.2031312443 - - unnamed protein product [Vitis vinifera]
17 Hb_004449_250 0.2070366325 - - PREDICTED: protein EI24 homolog [Jatropha curcas]
18 Hb_001439_250 0.2071148276 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
19 Hb_000926_340 0.2072113486 - - PREDICTED: EH domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_000684_220 0.2073461902 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002920_010 Hb_002920_010 Hb_150440_010 Hb_150440_010 Hb_002920_010--Hb_150440_010 Hb_004631_170 Hb_004631_170 Hb_002920_010--Hb_004631_170 Hb_000603_020 Hb_000603_020 Hb_002920_010--Hb_000603_020 Hb_000424_030 Hb_000424_030 Hb_002920_010--Hb_000424_030 Hb_014497_040 Hb_014497_040 Hb_002920_010--Hb_014497_040 Hb_098795_030 Hb_098795_030 Hb_002920_010--Hb_098795_030 Hb_150440_010--Hb_004631_170 Hb_002539_050 Hb_002539_050 Hb_150440_010--Hb_002539_050 Hb_150440_010--Hb_000424_030 Hb_006829_070 Hb_006829_070 Hb_150440_010--Hb_006829_070 Hb_150440_010--Hb_000603_020 Hb_004631_170--Hb_006829_070 Hb_004631_170--Hb_002539_050 Hb_004631_170--Hb_000424_030 Hb_002026_020 Hb_002026_020 Hb_004631_170--Hb_002026_020 Hb_186247_010 Hb_186247_010 Hb_004631_170--Hb_186247_010 Hb_000271_220 Hb_000271_220 Hb_000603_020--Hb_000271_220 Hb_003001_130 Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000603_020--Hb_000424_030 Hb_000424_030--Hb_006829_070 Hb_000424_030--Hb_000271_220 Hb_002217_320 Hb_002217_320 Hb_000424_030--Hb_002217_320 Hb_000622_330 Hb_000622_330 Hb_000424_030--Hb_000622_330 Hb_006925_050 Hb_006925_050 Hb_000424_030--Hb_006925_050 Hb_005941_030 Hb_005941_030 Hb_014497_040--Hb_005941_030 Hb_000012_400 Hb_000012_400 Hb_014497_040--Hb_000012_400 Hb_003029_060 Hb_003029_060 Hb_014497_040--Hb_003029_060 Hb_010812_110 Hb_010812_110 Hb_014497_040--Hb_010812_110 Hb_000562_100 Hb_000562_100 Hb_014497_040--Hb_000562_100 Hb_014497_040--Hb_004631_170 Hb_006615_230 Hb_006615_230 Hb_098795_030--Hb_006615_230 Hb_002495_030 Hb_002495_030 Hb_098795_030--Hb_002495_030 Hb_003470_110 Hb_003470_110 Hb_098795_030--Hb_003470_110 Hb_002097_080 Hb_002097_080 Hb_098795_030--Hb_002097_080 Hb_001976_020 Hb_001976_020 Hb_098795_030--Hb_001976_020 Hb_002685_220 Hb_002685_220 Hb_098795_030--Hb_002685_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.359274 6.33136 9.10144 36.1557 1.57667 6.66352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.23847 2.8886 0 6.28349 11.2168

CAGE analysis