Hb_002922_010

Information

Type -
Description -
Location Contig2922: 830-10185
Sequence    

Annotation

kegg
ID pop:POPTR_0014s16940g
description POPTRDRAFT_732511; heavy-metal-associated domain-containing family protein
nr
ID XP_002320539.2
description heavy-metal-associated domain-containing family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IAW7
description Heavy-metal-associated domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s16940g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30637: 9564-9989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002922_010 0.0 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
2 Hb_025477_020 0.0617868242 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
3 Hb_010417_120 0.0858582535 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001477_080 0.0890512703 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
5 Hb_041534_010 0.0892014052 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
6 Hb_125201_010 0.0967578519 - - hypothetical protein POPTR_0004s03690g [Populus trichocarpa]
7 Hb_003582_020 0.0968839159 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
8 Hb_000313_190 0.1006257995 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
9 Hb_004242_160 0.1035777127 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
10 Hb_009707_010 0.1049287234 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
11 Hb_000529_050 0.1055100656 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_001289_030 0.1078858134 - - syntaxin, plant, putative [Ricinus communis]
13 Hb_000347_360 0.1083263669 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
14 Hb_004586_120 0.1122518058 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
15 Hb_006648_030 0.1124497859 - - Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]
16 Hb_064692_010 0.1124876577 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
17 Hb_000338_020 0.1177835161 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
18 Hb_000904_090 0.1177908147 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
19 Hb_000134_010 0.1182435783 - - -
20 Hb_000227_410 0.1185768954 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]

Gene co-expression network

sample Hb_002922_010 Hb_002922_010 Hb_025477_020 Hb_025477_020 Hb_002922_010--Hb_025477_020 Hb_010417_120 Hb_010417_120 Hb_002922_010--Hb_010417_120 Hb_001477_080 Hb_001477_080 Hb_002922_010--Hb_001477_080 Hb_041534_010 Hb_041534_010 Hb_002922_010--Hb_041534_010 Hb_125201_010 Hb_125201_010 Hb_002922_010--Hb_125201_010 Hb_003582_020 Hb_003582_020 Hb_002922_010--Hb_003582_020 Hb_000210_150 Hb_000210_150 Hb_025477_020--Hb_000210_150 Hb_025477_020--Hb_003582_020 Hb_009707_010 Hb_009707_010 Hb_025477_020--Hb_009707_010 Hb_001289_030 Hb_001289_030 Hb_025477_020--Hb_001289_030 Hb_025477_020--Hb_001477_080 Hb_004242_160 Hb_004242_160 Hb_010417_120--Hb_004242_160 Hb_073870_020 Hb_073870_020 Hb_010417_120--Hb_073870_020 Hb_027214_060 Hb_027214_060 Hb_010417_120--Hb_027214_060 Hb_000347_360 Hb_000347_360 Hb_010417_120--Hb_000347_360 Hb_010417_120--Hb_025477_020 Hb_000529_050 Hb_000529_050 Hb_001477_080--Hb_000529_050 Hb_001477_080--Hb_004242_160 Hb_000313_190 Hb_000313_190 Hb_001477_080--Hb_000313_190 Hb_004586_120 Hb_004586_120 Hb_001477_080--Hb_004586_120 Hb_000322_020 Hb_000322_020 Hb_001477_080--Hb_000322_020 Hb_064692_010 Hb_064692_010 Hb_041534_010--Hb_064692_010 Hb_013591_010 Hb_013591_010 Hb_041534_010--Hb_013591_010 Hb_137612_010 Hb_137612_010 Hb_041534_010--Hb_137612_010 Hb_002422_020 Hb_002422_020 Hb_041534_010--Hb_002422_020 Hb_000338_020 Hb_000338_020 Hb_041534_010--Hb_000338_020 Hb_157957_010 Hb_157957_010 Hb_041534_010--Hb_157957_010 Hb_125201_010--Hb_009707_010 Hb_125201_010--Hb_004586_120 Hb_125201_010--Hb_000338_020 Hb_005618_020 Hb_005618_020 Hb_125201_010--Hb_005618_020 Hb_125201_010--Hb_157957_010 Hb_114932_010 Hb_114932_010 Hb_125201_010--Hb_114932_010 Hb_003582_020--Hb_001289_030 Hb_035391_010 Hb_035391_010 Hb_003582_020--Hb_035391_010 Hb_136027_010 Hb_136027_010 Hb_003582_020--Hb_136027_010 Hb_001411_150 Hb_001411_150 Hb_003582_020--Hb_001411_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0647869 103.925 17.3644 27.8287 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0494445 0.0777773 0.0716721 2.17278 1.03569

CAGE analysis