Hb_002924_050

Information

Type -
Description -
Location Contig2924: 66694-67209
Sequence    

Annotation

kegg
ID rcu:RCOM_0953610
description hypothetical protein
nr
ID XP_012066335.1
description PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RQ41
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0953610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30648: 66588-67046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002924_050 0.0 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
2 Hb_001930_070 0.1082699924 - - -
3 Hb_000567_200 0.1114731202 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
4 Hb_000472_040 0.1280902521 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
5 Hb_116701_020 0.1330698302 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006499_010 0.1355462008 - - -
7 Hb_000784_130 0.1439134338 - - hypothetical protein JCGZ_22813 [Jatropha curcas]
8 Hb_017434_090 0.1459876527 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000014_100 0.1500566391 - - -
10 Hb_000753_260 0.1580400627 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
11 Hb_000033_050 0.1594657129 - - -
12 Hb_001158_030 0.1594914624 - - -
13 Hb_007245_090 0.161846294 - - -
14 Hb_000371_110 0.161870927 - - -
15 Hb_001186_060 0.1628636224 - - -
16 Hb_000771_140 0.1636219012 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
17 Hb_003428_110 0.1641539179 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
18 Hb_003747_240 0.1670934355 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
19 Hb_000163_290 0.1672072308 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
20 Hb_000179_250 0.1676133677 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]

Gene co-expression network

sample Hb_002924_050 Hb_002924_050 Hb_001930_070 Hb_001930_070 Hb_002924_050--Hb_001930_070 Hb_000567_200 Hb_000567_200 Hb_002924_050--Hb_000567_200 Hb_000472_040 Hb_000472_040 Hb_002924_050--Hb_000472_040 Hb_116701_020 Hb_116701_020 Hb_002924_050--Hb_116701_020 Hb_006499_010 Hb_006499_010 Hb_002924_050--Hb_006499_010 Hb_000784_130 Hb_000784_130 Hb_002924_050--Hb_000784_130 Hb_001930_070--Hb_006499_010 Hb_001186_060 Hb_001186_060 Hb_001930_070--Hb_001186_060 Hb_007245_090 Hb_007245_090 Hb_001930_070--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_001930_070--Hb_000033_050 Hb_000014_100 Hb_000014_100 Hb_001930_070--Hb_000014_100 Hb_003428_110 Hb_003428_110 Hb_000567_200--Hb_003428_110 Hb_000163_290 Hb_000163_290 Hb_000567_200--Hb_000163_290 Hb_000567_200--Hb_006499_010 Hb_000567_200--Hb_001930_070 Hb_001518_020 Hb_001518_020 Hb_000567_200--Hb_001518_020 Hb_000472_040--Hb_116701_020 Hb_001141_080 Hb_001141_080 Hb_000472_040--Hb_001141_080 Hb_001386_130 Hb_001386_130 Hb_000472_040--Hb_001386_130 Hb_000472_040--Hb_000567_200 Hb_000472_040--Hb_003428_110 Hb_116701_020--Hb_001386_130 Hb_001780_060 Hb_001780_060 Hb_116701_020--Hb_001780_060 Hb_004813_010 Hb_004813_010 Hb_116701_020--Hb_004813_010 Hb_000590_090 Hb_000590_090 Hb_116701_020--Hb_000590_090 Hb_005389_140 Hb_005389_140 Hb_116701_020--Hb_005389_140 Hb_006499_010--Hb_000163_290 Hb_006499_010--Hb_007245_090 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_001186_060 Hb_003747_240 Hb_003747_240 Hb_006499_010--Hb_003747_240 Hb_003018_180 Hb_003018_180 Hb_000784_130--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_000784_130--Hb_002298_040 Hb_002890_220 Hb_002890_220 Hb_000784_130--Hb_002890_220 Hb_000753_260 Hb_000753_260 Hb_000784_130--Hb_000753_260 Hb_000130_390 Hb_000130_390 Hb_000784_130--Hb_000130_390 Hb_004545_150 Hb_004545_150 Hb_000784_130--Hb_004545_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.8718 6.02623 0.167547 0.325361 29.6577 15.0248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9775 9.4168 19.811 8.015 0.565687

CAGE analysis