Hb_002925_030

Information

Type -
Description -
Location Contig2925: 22841-23281
Sequence    

Annotation

kegg
ID cic:CICLE_v10029508mg
description hypothetical protein
nr
ID ADR71284.1
description 40S ribosomal protein S16B [Hevea brasiliensis]
swissprot
ID P46293
description 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1
trembl
ID I3NMP7
description 40S ribosomal protein S16B OS=Hevea brasiliensis GN=RPS16B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30665: 22748-23549
cDNA
(Sanger)
(ID:Location)		 005_I10.ab1: 22766-23408 , 016_L13.ab1: 22766-23411 , 036_O05.ab1: 22764-23409 , 036_O20.ab1: 22766-23408 , 047_P11.ab1: 22766-23411

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002925_030 0.0 - - 40S ribosomal protein S16B [Hevea brasiliensis]
2 Hb_003398_120 0.0563288622 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
3 Hb_001998_050 0.0602171907 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
4 Hb_000227_230 0.0634908676 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
5 Hb_001863_090 0.0651664793 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
6 Hb_002713_070 0.0674483293 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
7 Hb_011311_010 0.07107536 - - 60S ribosomal protein L27C [Hevea brasiliensis]
8 Hb_002660_030 0.0717294712 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003734_140 0.0718033971 - - conserved hypothetical protein [Ricinus communis]
10 Hb_032260_030 0.0726501381 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
11 Hb_001016_090 0.0743063829 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
12 Hb_089839_020 0.076175747 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
13 Hb_001505_020 0.0762583674 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
14 Hb_000136_170 0.0764922588 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
15 Hb_000363_480 0.0799671007 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
16 Hb_001248_080 0.0799830554 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
17 Hb_005883_100 0.0816150357 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
18 Hb_000264_090 0.0818215914 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_005511_160 0.0830387797 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
20 Hb_148200_010 0.0838665085 - - hypothetical protein 33 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002925_030 Hb_002925_030 Hb_003398_120 Hb_003398_120 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_000227_230 Hb_000227_230 Hb_002925_030--Hb_000227_230 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_003398_120--Hb_000227_230 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_003398_120--Hb_011311_010 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_001863_090--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_001863_090--Hb_002660_030 Hb_001016_090 Hb_001016_090 Hb_001863_090--Hb_001016_090 Hb_001863_090--Hb_003398_120 Hb_032260_030 Hb_032260_030 Hb_001863_090--Hb_032260_030 Hb_000136_170 Hb_000136_170 Hb_002713_070--Hb_000136_170 Hb_002713_070--Hb_002660_030 Hb_004375_100 Hb_004375_100 Hb_002713_070--Hb_004375_100 Hb_002713_070--Hb_001505_020 Hb_002713_070--Hb_089839_020 Hb_011311_010--Hb_002660_030 Hb_002588_010 Hb_002588_010 Hb_011311_010--Hb_002588_010 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
136.741 77.6805 80.0883 85.4031 140.727 199.781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
296.96 590.772 279.544 197.928 62.2544

CAGE analysis