Hb_002928_010

Information

Type -
Description -
Location Contig2928: 5426-10223
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27120g
description POPTRDRAFT_1079866; transducin family protein
nr
ID XP_012073672.1
description PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
swissprot
ID Q6NPN9
description WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1
trembl
ID A0A067KX34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08116 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30674: 5465-10162 , PASA_asmbl_30675: 6105-10154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_010 0.0 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
2 Hb_039605_010 0.0546425686 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
3 Hb_003994_140 0.0643493583 - - conserved hypothetical protein [Ricinus communis]
4 Hb_027073_030 0.0729971497 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
5 Hb_058972_010 0.0767965823 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
6 Hb_000414_050 0.0770245221 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
7 Hb_001418_040 0.0793675264 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [Jatropha curcas]
8 Hb_002042_030 0.0809358225 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
9 Hb_000138_130 0.0822011451 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
10 Hb_000983_120 0.0828560358 - - cyclin-dependent protein kinase, putative [Ricinus communis]
11 Hb_005965_030 0.0828725684 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
12 Hb_000563_330 0.0839112384 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_000576_050 0.0856415441 - - Kinase superfamily protein [Theobroma cacao]
14 Hb_000287_050 0.0876805669 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
15 Hb_002942_050 0.0878570626 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
16 Hb_003579_050 0.0878622435 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
17 Hb_011310_130 0.0886371982 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
18 Hb_001195_260 0.089388137 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
19 Hb_002311_070 0.08969884 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
20 Hb_000776_100 0.0897768271 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_002928_010 Hb_002928_010 Hb_039605_010 Hb_039605_010 Hb_002928_010--Hb_039605_010 Hb_003994_140 Hb_003994_140 Hb_002928_010--Hb_003994_140 Hb_027073_030 Hb_027073_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_000983_120 Hb_000983_120 Hb_039605_010--Hb_000983_120 Hb_000287_050 Hb_000287_050 Hb_039605_010--Hb_000287_050 Hb_039605_010--Hb_003994_140 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_003994_140--Hb_000563_330 Hb_000525_100 Hb_000525_100 Hb_003994_140--Hb_000525_100 Hb_003994_140--Hb_000983_120 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_003579_050 Hb_003579_050 Hb_027073_030--Hb_003579_050 Hb_000139_190 Hb_000139_190 Hb_027073_030--Hb_000139_190 Hb_027073_030--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_027073_030--Hb_004128_200 Hb_000576_050 Hb_000576_050 Hb_027073_030--Hb_000576_050 Hb_001195_260 Hb_001195_260 Hb_058972_010--Hb_001195_260 Hb_058972_010--Hb_000576_050 Hb_004122_040 Hb_004122_040 Hb_058972_010--Hb_004122_040 Hb_073973_130 Hb_073973_130 Hb_058972_010--Hb_073973_130 Hb_000107_190 Hb_000107_190 Hb_058972_010--Hb_000107_190 Hb_000610_010 Hb_000610_010 Hb_058972_010--Hb_000610_010 Hb_002783_170 Hb_002783_170 Hb_000414_050--Hb_002783_170 Hb_000776_100 Hb_000776_100 Hb_000414_050--Hb_000776_100 Hb_000414_050--Hb_002042_030 Hb_000138_130 Hb_000138_130 Hb_000414_050--Hb_000138_130 Hb_002836_140 Hb_002836_140 Hb_000414_050--Hb_002836_140 Hb_000915_080 Hb_000915_080 Hb_000414_050--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_001418_040--Hb_008556_030 Hb_006960_050 Hb_006960_050 Hb_001418_040--Hb_006960_050 Hb_001418_040--Hb_000576_050 Hb_000101_380 Hb_000101_380 Hb_001418_040--Hb_000101_380 Hb_001418_040--Hb_000414_050 Hb_001418_040--Hb_002836_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.2365 38.3963 72.1529 32.6007 54.9575 48.9059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9986 29.9286 23.3447 23.079 18.6877

CAGE analysis