Hb_002928_020

Information

Type -
Description -
Location Contig2928: 11214-16444
Sequence    

Annotation

kegg
ID rcu:RCOM_1600730
description hypothetical protein
nr
ID XP_012073671.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID A0A067KYA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08115 PE=4 SV=1
Gene Ontology
ID GO:0005768
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30677: 11272-11453 , PASA_asmbl_30678: 11497-11674 , PASA_asmbl_30679: 14421-15349 , PASA_asmbl_30680: 15669-16306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_020 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_000466_070 0.130008177 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
3 Hb_009541_010 0.1545942767 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
4 Hb_001817_120 0.1546127739 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
5 Hb_002943_010 0.1599781636 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
6 Hb_012760_090 0.1663272984 - - Aspartic proteinase-like protein 1 [Morus notabilis]
7 Hb_000254_010 0.1695415579 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
8 Hb_000414_140 0.1702724076 - - Chalcone synthase, putative [Ricinus communis]
9 Hb_001459_090 0.1718267644 - - unnamed protein product [Vitis vinifera]
10 Hb_002000_090 0.173921087 - - 60S ribosomal protein L3B [Hevea brasiliensis]
11 Hb_000638_060 0.1772373371 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
12 Hb_010381_020 0.1777118673 - - Endosomal P24A protein precursor, putative [Ricinus communis]
13 Hb_011310_050 0.1782248424 - - PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Jatropha curcas]
14 Hb_000120_740 0.1782425623 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
15 Hb_002641_160 0.1791323593 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000834_180 0.1830991108 - - PREDICTED: kinesin-13A-like isoform X1 [Jatropha curcas]
17 Hb_001353_020 0.1838234048 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005724_040 0.1848025905 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
19 Hb_002603_010 0.1848067743 - - unnamed protein product [Vitis vinifera]
20 Hb_000283_140 0.1857694365 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002928_020 Hb_002928_020 Hb_000466_070 Hb_000466_070 Hb_002928_020--Hb_000466_070 Hb_009541_010 Hb_009541_010 Hb_002928_020--Hb_009541_010 Hb_001817_120 Hb_001817_120 Hb_002928_020--Hb_001817_120 Hb_002943_010 Hb_002943_010 Hb_002928_020--Hb_002943_010 Hb_012760_090 Hb_012760_090 Hb_002928_020--Hb_012760_090 Hb_000254_010 Hb_000254_010 Hb_002928_020--Hb_000254_010 Hb_003582_090 Hb_003582_090 Hb_000466_070--Hb_003582_090 Hb_000414_140 Hb_000414_140 Hb_000466_070--Hb_000414_140 Hb_000445_370 Hb_000445_370 Hb_000466_070--Hb_000445_370 Hb_017098_040 Hb_017098_040 Hb_000466_070--Hb_017098_040 Hb_001195_660 Hb_001195_660 Hb_000466_070--Hb_001195_660 Hb_009541_010--Hb_000414_140 Hb_000320_260 Hb_000320_260 Hb_009541_010--Hb_000320_260 Hb_027043_010 Hb_027043_010 Hb_009541_010--Hb_027043_010 Hb_083493_010 Hb_083493_010 Hb_009541_010--Hb_083493_010 Hb_009541_010--Hb_000466_070 Hb_002000_090 Hb_002000_090 Hb_001817_120--Hb_002000_090 Hb_001817_120--Hb_000254_010 Hb_073808_010 Hb_073808_010 Hb_001817_120--Hb_073808_010 Hb_001179_010 Hb_001179_010 Hb_001817_120--Hb_001179_010 Hb_007237_010 Hb_007237_010 Hb_001817_120--Hb_007237_010 Hb_000340_220 Hb_000340_220 Hb_002943_010--Hb_000340_220 Hb_000066_040 Hb_000066_040 Hb_002943_010--Hb_000066_040 Hb_002603_010 Hb_002603_010 Hb_002943_010--Hb_002603_010 Hb_013399_090 Hb_013399_090 Hb_002943_010--Hb_013399_090 Hb_000404_040 Hb_000404_040 Hb_002943_010--Hb_000404_040 Hb_002641_160 Hb_002641_160 Hb_012760_090--Hb_002641_160 Hb_010050_020 Hb_010050_020 Hb_012760_090--Hb_010050_020 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_001048_100 Hb_001048_100 Hb_000254_010--Hb_001048_100 Hb_001189_100 Hb_001189_100 Hb_000254_010--Hb_001189_100 Hb_042202_020 Hb_042202_020 Hb_000254_010--Hb_042202_020 Hb_033234_010 Hb_033234_010 Hb_000254_010--Hb_033234_010 Hb_000847_020 Hb_000847_020 Hb_000254_010--Hb_000847_020 Hb_000024_130 Hb_000024_130 Hb_000254_010--Hb_000024_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0965842 1.58271 2.3899 3.40833 0.537466 0.357336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0161054 0.826474 1.63259 2.01313

CAGE analysis