Hb_002928_070

Information

Type -
Description -
Location Contig2928: 35556-35914
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_070 0.0 - - -
2 Hb_093432_020 0.0242075296 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
3 Hb_009922_010 0.0623760303 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
4 Hb_053643_010 0.0998027976 - - Zinc finger protein GIS2 [Medicago truncatula]
5 Hb_004108_010 0.2024613865 - - -
6 Hb_061365_010 0.2262549747 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_001279_230 0.2418705659 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
8 Hb_000684_340 0.2445149566 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
9 Hb_144951_010 0.2464333818 - - putative reverse transcriptase [Oryza sativa Japonica Group]
10 Hb_137515_010 0.2513542394 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
11 Hb_033623_010 0.2561655965 - - -
12 Hb_005203_050 0.2612727812 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_189237_010 0.2851802488 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_003647_120 0.2995374677 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
15 Hb_004846_170 0.3015222141 - - heat-shock protein 70 [Hevea brasiliensis]
16 Hb_004483_020 0.302211124 - - -
17 Hb_050495_010 0.3057808112 - - heat-shock protein, putative [Ricinus communis]
18 Hb_003337_070 0.3065305725 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
19 Hb_079297_010 0.3092720864 - - hypothetical protein VITISV_012409 [Vitis vinifera]
20 Hb_004939_020 0.3134580298 - - gag/pol protein [Bryonia dioica]

Gene co-expression network

sample Hb_002928_070 Hb_002928_070 Hb_093432_020 Hb_093432_020 Hb_002928_070--Hb_093432_020 Hb_009922_010 Hb_009922_010 Hb_002928_070--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_002928_070--Hb_053643_010 Hb_004108_010 Hb_004108_010 Hb_002928_070--Hb_004108_010 Hb_061365_010 Hb_061365_010 Hb_002928_070--Hb_061365_010 Hb_001279_230 Hb_001279_230 Hb_002928_070--Hb_001279_230 Hb_093432_020--Hb_009922_010 Hb_093432_020--Hb_053643_010 Hb_093432_020--Hb_004108_010 Hb_093432_020--Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_093432_020--Hb_137515_010 Hb_009922_010--Hb_053643_010 Hb_009922_010--Hb_061365_010 Hb_009922_010--Hb_137515_010 Hb_005203_050 Hb_005203_050 Hb_009922_010--Hb_005203_050 Hb_053643_010--Hb_061365_010 Hb_053643_010--Hb_137515_010 Hb_053643_010--Hb_001279_230 Hb_033623_010 Hb_033623_010 Hb_004108_010--Hb_033623_010 Hb_189237_010 Hb_189237_010 Hb_004108_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_004108_010--Hb_144951_010 Hb_005389_010 Hb_005389_010 Hb_004108_010--Hb_005389_010 Hb_061365_010--Hb_137515_010 Hb_061365_010--Hb_005203_050 Hb_003647_120 Hb_003647_120 Hb_001279_230--Hb_003647_120 Hb_001104_040 Hb_001104_040 Hb_001279_230--Hb_001104_040 Hb_003337_070 Hb_003337_070 Hb_001279_230--Hb_003337_070 Hb_184326_010 Hb_184326_010 Hb_001279_230--Hb_184326_010 Hb_001723_110 Hb_001723_110 Hb_001279_230--Hb_001723_110 Hb_006745_020 Hb_006745_020 Hb_001279_230--Hb_006745_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.882202 0 0 0.578263 0.432328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis