Hb_002928_100

Information

Type -
Description -
Location Contig2928: 79696-81190
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_100 0.0 - - -
2 Hb_001722_030 0.2496842118 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105123768 isoform X2 [Populus euphratica]
3 Hb_048610_010 0.2845538516 - - -
4 Hb_026766_010 0.2883558023 - - -
5 Hb_029162_020 0.2884065315 - - -
6 Hb_002094_020 0.28843582 - - PREDICTED: alpha-copaene synthase-like [Jatropha curcas]
7 Hb_005539_300 0.30556997 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
8 Hb_002231_050 0.3089216379 - - -
9 Hb_011401_010 0.3131874741 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_027751_030 0.3217614717 - - -
11 Hb_001135_230 0.3247531043 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
12 Hb_001230_010 0.3382302286 - - -
13 Hb_000284_160 0.3445437951 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
14 Hb_002007_290 0.3455125477 - - -
15 Hb_000205_170 0.3493040631 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
16 Hb_000614_330 0.3550716156 - - hypothetical protein POPTR_0008s18070g [Populus trichocarpa]
17 Hb_106159_010 0.3590176957 - - -
18 Hb_105061_010 0.3612068701 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
19 Hb_004413_040 0.3634211597 - - -
20 Hb_031862_050 0.366087622 - - Cell division cycle protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002928_100 Hb_002928_100 Hb_001722_030 Hb_001722_030 Hb_002928_100--Hb_001722_030 Hb_048610_010 Hb_048610_010 Hb_002928_100--Hb_048610_010 Hb_026766_010 Hb_026766_010 Hb_002928_100--Hb_026766_010 Hb_029162_020 Hb_029162_020 Hb_002928_100--Hb_029162_020 Hb_002094_020 Hb_002094_020 Hb_002928_100--Hb_002094_020 Hb_005539_300 Hb_005539_300 Hb_002928_100--Hb_005539_300 Hb_011401_010 Hb_011401_010 Hb_001722_030--Hb_011401_010 Hb_002231_050 Hb_002231_050 Hb_001722_030--Hb_002231_050 Hb_106159_010 Hb_106159_010 Hb_001722_030--Hb_106159_010 Hb_007792_010 Hb_007792_010 Hb_001722_030--Hb_007792_010 Hb_002205_200 Hb_002205_200 Hb_001722_030--Hb_002205_200 Hb_048610_010--Hb_029162_020 Hb_001230_010 Hb_001230_010 Hb_048610_010--Hb_001230_010 Hb_144101_010 Hb_144101_010 Hb_048610_010--Hb_144101_010 Hb_002007_290 Hb_002007_290 Hb_048610_010--Hb_002007_290 Hb_031862_050 Hb_031862_050 Hb_048610_010--Hb_031862_050 Hb_168418_010 Hb_168418_010 Hb_048610_010--Hb_168418_010 Hb_027751_030 Hb_027751_030 Hb_026766_010--Hb_027751_030 Hb_000284_160 Hb_000284_160 Hb_026766_010--Hb_000284_160 Hb_003992_120 Hb_003992_120 Hb_026766_010--Hb_003992_120 Hb_004584_010 Hb_004584_010 Hb_026766_010--Hb_004584_010 Hb_000614_330 Hb_000614_330 Hb_026766_010--Hb_000614_330 Hb_000603_240 Hb_000603_240 Hb_026766_010--Hb_000603_240 Hb_029162_020--Hb_144101_010 Hb_029162_020--Hb_001230_010 Hb_029162_020--Hb_031862_050 Hb_029162_020--Hb_002007_290 Hb_029162_020--Hb_168418_010 Hb_017111_010 Hb_017111_010 Hb_002094_020--Hb_017111_010 Hb_002094_020--Hb_027751_030 Hb_000959_360 Hb_000959_360 Hb_002094_020--Hb_000959_360 Hb_002094_020--Hb_001230_010 Hb_000928_230 Hb_000928_230 Hb_002094_020--Hb_000928_230 Hb_126669_010 Hb_126669_010 Hb_002094_020--Hb_126669_010 Hb_000071_200 Hb_000071_200 Hb_005539_300--Hb_000071_200 Hb_001676_030 Hb_001676_030 Hb_005539_300--Hb_001676_030 Hb_142068_020 Hb_142068_020 Hb_005539_300--Hb_142068_020 Hb_000454_020 Hb_000454_020 Hb_005539_300--Hb_000454_020 Hb_000656_130 Hb_000656_130 Hb_005539_300--Hb_000656_130 Hb_001217_060 Hb_001217_060 Hb_005539_300--Hb_001217_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.154683 0 0 0 0 0.052045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0677109 0 0 0 0

CAGE analysis