Hb_002928_110

Information

Type -
Description -
Location Contig2928: 82735-84044
Sequence    

Annotation

kegg
ID rcu:RCOM_1600960
description hypothetical protein
nr
ID XP_012073662.1
description PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08089 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30688: 82992-84035
cDNA
(Sanger)
(ID:Location)		 034_J10.ab1: 82992-83903

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_110 0.0 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
2 Hb_002291_030 0.0684719295 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
3 Hb_001478_050 0.103353935 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
4 Hb_092706_020 0.1057888978 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
5 Hb_002326_030 0.1133157497 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_012522_030 0.120255582 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_012725_110 0.12070746 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
8 Hb_002387_060 0.1207839538 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000861_040 0.1212872212 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
10 Hb_002282_020 0.1236999265 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
11 Hb_000836_500 0.1244278126 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
12 Hb_002835_170 0.12900305 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
13 Hb_001102_010 0.1297161393 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
14 Hb_001191_100 0.1304670388 - - F-actin capping protein beta subunit [Populus trichocarpa]
15 Hb_010589_040 0.1309252588 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001315_020 0.1323515686 - - ring finger protein, putative [Ricinus communis]
17 Hb_012799_060 0.1339223507 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
18 Hb_001606_070 0.1346089958 - - fimbrin, putative [Ricinus communis]
19 Hb_003581_090 0.1349772452 - - PREDICTED: galactose oxidase [Jatropha curcas]
20 Hb_001141_470 0.1373408221 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]

Gene co-expression network

sample Hb_002928_110 Hb_002928_110 Hb_002291_030 Hb_002291_030 Hb_002928_110--Hb_002291_030 Hb_001478_050 Hb_001478_050 Hb_002928_110--Hb_001478_050 Hb_092706_020 Hb_092706_020 Hb_002928_110--Hb_092706_020 Hb_002326_030 Hb_002326_030 Hb_002928_110--Hb_002326_030 Hb_012522_030 Hb_012522_030 Hb_002928_110--Hb_012522_030 Hb_012725_110 Hb_012725_110 Hb_002928_110--Hb_012725_110 Hb_002291_030--Hb_012522_030 Hb_002291_030--Hb_002326_030 Hb_002291_030--Hb_001478_050 Hb_002387_060 Hb_002387_060 Hb_002291_030--Hb_002387_060 Hb_002291_030--Hb_092706_020 Hb_002835_170 Hb_002835_170 Hb_001478_050--Hb_002835_170 Hb_005455_070 Hb_005455_070 Hb_001478_050--Hb_005455_070 Hb_001478_050--Hb_002326_030 Hb_008695_190 Hb_008695_190 Hb_001478_050--Hb_008695_190 Hb_007229_060 Hb_007229_060 Hb_001478_050--Hb_007229_060 Hb_003581_090 Hb_003581_090 Hb_092706_020--Hb_003581_090 Hb_000521_150 Hb_000521_150 Hb_092706_020--Hb_000521_150 Hb_000085_200 Hb_000085_200 Hb_092706_020--Hb_000085_200 Hb_000926_290 Hb_000926_290 Hb_092706_020--Hb_000926_290 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_002326_030--Hb_007229_060 Hb_012522_030--Hb_002387_060 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_000419_040 Hb_000419_040 Hb_012522_030--Hb_000419_040 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_004206_030 Hb_004206_030 Hb_012725_110--Hb_004206_030 Hb_012725_110--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_012725_110--Hb_002685_090 Hb_000041_070 Hb_000041_070 Hb_012725_110--Hb_000041_070 Hb_000836_500 Hb_000836_500 Hb_012725_110--Hb_000836_500 Hb_012725_110--Hb_002291_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
255.277 5.6571 28.659 18.3355 103.121 118.997
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
212.945 246.759 289.12 26.7738 2.30966

CAGE analysis