Hb_002928_130

Information

Type -
Description -
Location Contig2928: 92859-95323
Sequence    

Annotation

kegg
ID rcu:RCOM_1600990
description small nuclear ribonucleoprotein, putative
nr
ID XP_012073653.1
description PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
swissprot
ID Q9LM92
description Small nuclear ribonucleoprotein SmD3b OS=Arabidopsis thaliana GN=SMD3B PE=2 SV=1
trembl
ID A0A067KX12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08086 PE=4 SV=1
Gene Ontology
ID GO:0019013
description small nuclear ribonucleoprotein sm d3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30692: 92875-95409
cDNA
(Sanger)
(ID:Location)		 031_G22.ab1: 92875-95226 , 046_C11.ab1: 92875-95207

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_130 0.0 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
2 Hb_005993_040 0.0513350474 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
3 Hb_000015_080 0.0555715351 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
4 Hb_002232_440 0.0646650223 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
5 Hb_000392_440 0.0724840981 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
6 Hb_002346_020 0.0729407386 - - -
7 Hb_000331_080 0.0748177325 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
8 Hb_001552_020 0.0751049706 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
9 Hb_001540_010 0.0752370183 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
10 Hb_002686_020 0.0766114714 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
11 Hb_003050_080 0.0767229776 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_028995_040 0.0788523197 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
13 Hb_000656_400 0.079694045 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
14 Hb_010921_010 0.0800841932 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
15 Hb_003126_080 0.0807115198 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
16 Hb_001404_100 0.0810652148 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
17 Hb_008878_030 0.0814653513 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
18 Hb_011360_140 0.0816268133 - - 40S ribosomal protein S19, putative [Ricinus communis]
19 Hb_004491_010 0.0817311848 - - 60S ribosomal protein L51, putative [Ricinus communis]
20 Hb_153112_020 0.0825033584 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]

Gene co-expression network

sample Hb_002928_130 Hb_002928_130 Hb_005993_040 Hb_005993_040 Hb_002928_130--Hb_005993_040 Hb_000015_080 Hb_000015_080 Hb_002928_130--Hb_000015_080 Hb_002232_440 Hb_002232_440 Hb_002928_130--Hb_002232_440 Hb_000392_440 Hb_000392_440 Hb_002928_130--Hb_000392_440 Hb_002346_020 Hb_002346_020 Hb_002928_130--Hb_002346_020 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_000015_080--Hb_011360_140 Hb_003540_040 Hb_003540_040 Hb_000015_080--Hb_003540_040 Hb_000015_080--Hb_000392_440 Hb_000015_080--Hb_005993_040 Hb_000392_270 Hb_000392_270 Hb_000015_080--Hb_000392_270 Hb_007154_020 Hb_007154_020 Hb_002232_440--Hb_007154_020 Hb_001540_010 Hb_001540_010 Hb_002232_440--Hb_001540_010 Hb_001292_020 Hb_001292_020 Hb_002232_440--Hb_001292_020 Hb_010921_010 Hb_010921_010 Hb_002232_440--Hb_010921_010 Hb_000698_030 Hb_000698_030 Hb_002232_440--Hb_000698_030 Hb_000392_440--Hb_011360_140 Hb_010661_030 Hb_010661_030 Hb_000392_440--Hb_010661_030 Hb_000392_440--Hb_011571_020 Hb_047503_010 Hb_047503_010 Hb_002346_020--Hb_047503_010 Hb_001512_060 Hb_001512_060 Hb_002346_020--Hb_001512_060 Hb_001552_020 Hb_001552_020 Hb_002346_020--Hb_001552_020 Hb_000096_070 Hb_000096_070 Hb_002346_020--Hb_000096_070 Hb_002027_250 Hb_002027_250 Hb_002346_020--Hb_002027_250 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_004994_100 Hb_004994_100 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_012725_050 Hb_012725_050 Hb_000331_080--Hb_012725_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.064 56.4147 63.2613 30.5307 133.108 100.198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
144.952 178.347 113.803 64.2902 47.8961

CAGE analysis