Hb_002928_180

Information

Type -
Description -
Location Contig2928: 139815-149273
Sequence    

Annotation

kegg
ID rcu:RCOM_1601030
description catalase, putative (EC:1.11.1.6)
nr
ID AAD50974.1
description catalase CAT1 [Manihot esculenta]
swissprot
ID P49318
description Catalase isozyme 2 OS=Ricinus communis GN=CAT2 PE=2 SV=1
trembl
ID Q9SW99
description Catalase CAT1 OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0009514
description catalase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30704: 145014-149248 , PASA_asmbl_30705: 143214-149248 , PASA_asmbl_30706: 139873-143202 , PASA_asmbl_30707: 139937-143140 , PASA_asmbl_30708: 142426-149248
cDNA
(Sanger)
(ID:Location)		 003_L24.ab1: 147430-148908 , 008_P18.ab1: 145014-147442 , 032_D23.ab1: 142734-142974 , 032_E06.ab1: 139873-141053 , 048_H09.ab1: 142730-142974

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_180 0.0 - - catalase CAT1 [Manihot esculenta]
2 Hb_000429_110 0.107873573 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
3 Hb_000236_110 0.1085994611 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
4 Hb_000778_020 0.1094627595 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
5 Hb_002928_120 0.1138938613 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
6 Hb_010174_190 0.1298297396 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
7 Hb_001410_010 0.1324620275 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
8 Hb_002662_090 0.1326430868 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
9 Hb_001355_070 0.1360320064 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
10 Hb_000589_220 0.136685279 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_025432_010 0.1370837161 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
12 Hb_057079_020 0.1374240516 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003894_100 0.1378215745 - - PREDICTED: AT-hook motif nuclear-localized protein 1-like [Jatropha curcas]
14 Hb_011310_200 0.1388442715 - - grr1, plant, putative [Ricinus communis]
15 Hb_008175_030 0.1391970167 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
16 Hb_000189_120 0.1411833701 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
17 Hb_001148_040 0.1447095046 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
18 Hb_052764_080 0.1458530372 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
19 Hb_000056_280 0.1459140162 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
20 Hb_004218_160 0.1470621763 - - NBS-LRR type disease resistance protein [Medicago truncatula]

Gene co-expression network

sample Hb_002928_180 Hb_002928_180 Hb_000429_110 Hb_000429_110 Hb_002928_180--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_180--Hb_000236_110 Hb_000778_020 Hb_000778_020 Hb_002928_180--Hb_000778_020 Hb_002928_120 Hb_002928_120 Hb_002928_180--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_002928_180--Hb_010174_190 Hb_001410_010 Hb_001410_010 Hb_002928_180--Hb_001410_010 Hb_052764_080 Hb_052764_080 Hb_000429_110--Hb_052764_080 Hb_001259_100 Hb_001259_100 Hb_000429_110--Hb_001259_100 Hb_000429_110--Hb_002928_120 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070 Hb_000589_220 Hb_000589_220 Hb_000236_110--Hb_000589_220 Hb_002218_070 Hb_002218_070 Hb_000236_110--Hb_002218_070 Hb_000236_110--Hb_000778_020 Hb_022501_020 Hb_022501_020 Hb_000236_110--Hb_022501_020 Hb_013749_060 Hb_013749_060 Hb_000236_110--Hb_013749_060 Hb_008175_030 Hb_008175_030 Hb_000778_020--Hb_008175_030 Hb_057079_020 Hb_057079_020 Hb_000778_020--Hb_057079_020 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_000793_040 Hb_000793_040 Hb_002928_120--Hb_000793_040 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_002928_120--Hb_000236_110 Hb_010174_190--Hb_025432_010 Hb_064985_010 Hb_064985_010 Hb_010174_190--Hb_064985_010 Hb_001008_110 Hb_001008_110 Hb_010174_190--Hb_001008_110 Hb_010174_190--Hb_022501_020 Hb_068332_010 Hb_068332_010 Hb_010174_190--Hb_068332_010 Hb_001410_010--Hb_002218_070 Hb_001410_010--Hb_057079_020 Hb_011310_200 Hb_011310_200 Hb_001410_010--Hb_011310_200 Hb_001410_010--Hb_000236_110 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7121 560.672 90.3564 298.794 26.9614 34.0101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6672 38.5572 35.6863 437.197 109.924

CAGE analysis