Hb_002928_190

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig2928: 153767-159089
Sequence    

Annotation

kegg
ID rcu:RCOM_1601140
description hypothetical protein
nr
ID XP_012073646.1
description PREDICTED: protein NLP4 [Jatropha curcas]
swissprot
ID Q9LE38
description Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1
trembl
ID B9R8N5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1601140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30710: 153121-154604 , PASA_asmbl_30711: 154632-154965 , PASA_asmbl_30713: 156115-158087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_190 0.0 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
2 Hb_012490_010 0.0619114026 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
3 Hb_005649_080 0.0623460755 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
4 Hb_020805_150 0.0647927071 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_003604_050 0.0655752401 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
6 Hb_008686_020 0.0662313875 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
7 Hb_003939_060 0.0695867773 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001951_170 0.076782408 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
9 Hb_011249_060 0.0786328515 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
10 Hb_003929_210 0.0788800672 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
11 Hb_022425_060 0.0795360437 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
12 Hb_004785_030 0.0801910459 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
13 Hb_009302_030 0.0807743203 - - hypothetical protein RCOM_1176340 [Ricinus communis]
14 Hb_003047_020 0.0813555005 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_000856_020 0.0813861152 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
16 Hb_026198_060 0.0820994778 - - PREDICTED: calcium-dependent protein kinase 11 [Jatropha curcas]
17 Hb_000649_250 0.0825108959 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
18 Hb_001257_100 0.0842803056 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
19 Hb_004696_070 0.0843638754 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
20 Hb_000331_580 0.0844985382 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002928_190 Hb_002928_190 Hb_012490_010 Hb_012490_010 Hb_002928_190--Hb_012490_010 Hb_005649_080 Hb_005649_080 Hb_002928_190--Hb_005649_080 Hb_020805_150 Hb_020805_150 Hb_002928_190--Hb_020805_150 Hb_003604_050 Hb_003604_050 Hb_002928_190--Hb_003604_050 Hb_008686_020 Hb_008686_020 Hb_002928_190--Hb_008686_020 Hb_003939_060 Hb_003939_060 Hb_002928_190--Hb_003939_060 Hb_004696_070 Hb_004696_070 Hb_012490_010--Hb_004696_070 Hb_012490_010--Hb_008686_020 Hb_004551_020 Hb_004551_020 Hb_012490_010--Hb_004551_020 Hb_012490_010--Hb_020805_150 Hb_000170_100 Hb_000170_100 Hb_012490_010--Hb_000170_100 Hb_001226_110 Hb_001226_110 Hb_005649_080--Hb_001226_110 Hb_170077_010 Hb_170077_010 Hb_005649_080--Hb_170077_010 Hb_005649_080--Hb_020805_150 Hb_000358_220 Hb_000358_220 Hb_005649_080--Hb_000358_220 Hb_005649_080--Hb_003939_060 Hb_022425_060 Hb_022425_060 Hb_020805_150--Hb_022425_060 Hb_020805_150--Hb_170077_010 Hb_003918_030 Hb_003918_030 Hb_020805_150--Hb_003918_030 Hb_001904_030 Hb_001904_030 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_002918_320 Hb_002918_320 Hb_008686_020--Hb_002918_320 Hb_001951_100 Hb_001951_100 Hb_008686_020--Hb_001951_100 Hb_008686_020--Hb_004551_020 Hb_000367_020 Hb_000367_020 Hb_008686_020--Hb_000367_020 Hb_003929_210 Hb_003929_210 Hb_003939_060--Hb_003929_210 Hb_009302_030 Hb_009302_030 Hb_003939_060--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_003939_060--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_003939_060--Hb_000996_020 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.24772 25.8819 10.1186 12.6162 6.28221 8.89593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.91435 4.07439 6.69653 11.797 13.3713

CAGE analysis