Hb_002928_210

Information

Type -
Description -
Location Contig2928: 190927-191620
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_210 0.0 - - -
2 Hb_005211_070 0.1569305102 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
3 Hb_010827_020 0.1798088802 - - 60S ribosomal protein L17B [Hevea brasiliensis]
4 Hb_000106_100 0.1918996676 - - -
5 Hb_004195_100 0.1919492279 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
6 Hb_005539_210 0.2032118476 - - -
7 Hb_000215_180 0.2092327915 - - hypothetical protein 17 [Hevea brasiliensis]
8 Hb_007218_100 0.2107197632 - - phosphofructokinase [Hevea brasiliensis]
9 Hb_001579_140 0.2129552144 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
10 Hb_009838_040 0.2131683611 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
11 Hb_012239_100 0.2134180972 - - hypothetical protein VITISV_043897 [Vitis vinifera]
12 Hb_003702_080 0.216276154 - - cysteine protease, putative [Ricinus communis]
13 Hb_004223_260 0.2173936684 - - hypothetical protein F383_09277 [Gossypium arboreum]
14 Hb_000819_070 0.2193413426 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
15 Hb_000920_320 0.2198735803 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
16 Hb_075653_020 0.2230238354 - - -
17 Hb_004635_060 0.2243675342 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
18 Hb_000613_170 0.2252279808 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
19 Hb_000635_080 0.2259781278 - - 60S ribosomal protein L17A [Hevea brasiliensis]
20 Hb_168711_010 0.2262996873 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]

Gene co-expression network

sample Hb_002928_210 Hb_002928_210 Hb_005211_070 Hb_005211_070 Hb_002928_210--Hb_005211_070 Hb_010827_020 Hb_010827_020 Hb_002928_210--Hb_010827_020 Hb_000106_100 Hb_000106_100 Hb_002928_210--Hb_000106_100 Hb_004195_100 Hb_004195_100 Hb_002928_210--Hb_004195_100 Hb_005539_210 Hb_005539_210 Hb_002928_210--Hb_005539_210 Hb_000215_180 Hb_000215_180 Hb_002928_210--Hb_000215_180 Hb_010594_030 Hb_010594_030 Hb_005211_070--Hb_010594_030 Hb_002492_020 Hb_002492_020 Hb_005211_070--Hb_002492_020 Hb_005211_070--Hb_010827_020 Hb_005211_070--Hb_000215_180 Hb_005211_070--Hb_005539_210 Hb_000676_240 Hb_000676_240 Hb_005211_070--Hb_000676_240 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_002248_100 Hb_002248_100 Hb_010827_020--Hb_002248_100 Hb_000635_080 Hb_000635_080 Hb_010827_020--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040 Hb_000106_100--Hb_000215_180 Hb_003349_070 Hb_003349_070 Hb_000106_100--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_000106_100--Hb_004223_260 Hb_000106_100--Hb_000780_210 Hb_001623_430 Hb_001623_430 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040 Hb_004195_100--Hb_005539_210 Hb_006745_060 Hb_006745_060 Hb_004195_100--Hb_006745_060 Hb_004195_100--Hb_005211_070 Hb_001959_260 Hb_001959_260 Hb_004195_100--Hb_001959_260 Hb_004195_100--Hb_002492_020 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_005539_210--Hb_002492_020 Hb_005539_210--Hb_010594_030 Hb_001723_080 Hb_001723_080 Hb_005539_210--Hb_001723_080 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112023 0.0374456 0 0.0485241 0.210238 0.0662778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43501 1.85276 0.562709 0.793326 0

CAGE analysis