Hb_002928_220

Information

Type -
Description -
Location Contig2928: 197315-199536
Sequence    

Annotation

kegg
ID rcu:RCOM_1601170
description serine/threonine-protein kinase cx32, putative (EC:2.7.11.25)
nr
ID XP_002510681.1
description serine/threonine-protein kinase cx32, putative [Ricinus communis]
swissprot
ID P46573
description Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2
trembl
ID B9R8N8
description Serine/threonine-protein kinase cx32, putative OS=Ricinus communis GN=RCOM_1601170 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable serine threonine-protein kinase nak

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30716: 197791-198330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_220 0.0 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
2 Hb_006970_100 0.0974299298 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_000149_120 0.1054536968 - - PREDICTED: uncharacterized protein LOC105642119 isoform X2 [Jatropha curcas]
4 Hb_006569_110 0.1092676076 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009486_100 0.1144198238 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_002542_090 0.1154867008 - - Potassium transporter, putative [Ricinus communis]
7 Hb_006938_010 0.1180201512 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
8 Hb_007382_070 0.1189193723 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
9 Hb_005116_010 0.1276779065 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
10 Hb_000254_150 0.1339164165 - - PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
11 Hb_003060_080 0.1370853098 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
12 Hb_040963_010 0.1385854874 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
13 Hb_005010_040 0.1386658665 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
14 Hb_009812_010 0.1397342614 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_006120_020 0.1405466384 - - -
16 Hb_007894_260 0.1418758973 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_006651_010 0.1430898099 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
18 Hb_000101_360 0.146065956 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
19 Hb_008080_050 0.1489678754 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000575_110 0.1527481429 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002928_220 Hb_002928_220 Hb_006970_100 Hb_006970_100 Hb_002928_220--Hb_006970_100 Hb_000149_120 Hb_000149_120 Hb_002928_220--Hb_000149_120 Hb_006569_110 Hb_006569_110 Hb_002928_220--Hb_006569_110 Hb_009486_100 Hb_009486_100 Hb_002928_220--Hb_009486_100 Hb_002542_090 Hb_002542_090 Hb_002928_220--Hb_002542_090 Hb_006938_010 Hb_006938_010 Hb_002928_220--Hb_006938_010 Hb_006651_010 Hb_006651_010 Hb_006970_100--Hb_006651_010 Hb_007382_070 Hb_007382_070 Hb_006970_100--Hb_007382_070 Hb_003060_080 Hb_003060_080 Hb_006970_100--Hb_003060_080 Hb_033622_020 Hb_033622_020 Hb_006970_100--Hb_033622_020 Hb_006970_100--Hb_006569_110 Hb_006120_020 Hb_006120_020 Hb_000149_120--Hb_006120_020 Hb_040963_010 Hb_040963_010 Hb_000149_120--Hb_040963_010 Hb_000149_120--Hb_007382_070 Hb_024570_020 Hb_024570_020 Hb_000149_120--Hb_024570_020 Hb_000149_120--Hb_006970_100 Hb_006569_110--Hb_006938_010 Hb_007894_260 Hb_007894_260 Hb_006569_110--Hb_007894_260 Hb_006569_110--Hb_003060_080 Hb_000254_150 Hb_000254_150 Hb_006569_110--Hb_000254_150 Hb_000575_110 Hb_000575_110 Hb_009486_100--Hb_000575_110 Hb_005116_010 Hb_005116_010 Hb_009486_100--Hb_005116_010 Hb_056101_010 Hb_056101_010 Hb_009486_100--Hb_056101_010 Hb_009812_010 Hb_009812_010 Hb_009486_100--Hb_009812_010 Hb_001454_300 Hb_001454_300 Hb_009486_100--Hb_001454_300 Hb_002542_090--Hb_006938_010 Hb_005010_040 Hb_005010_040 Hb_002542_090--Hb_005010_040 Hb_001331_040 Hb_001331_040 Hb_002542_090--Hb_001331_040 Hb_000010_200 Hb_000010_200 Hb_002542_090--Hb_000010_200 Hb_001856_060 Hb_001856_060 Hb_002542_090--Hb_001856_060 Hb_006938_010--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006938_010--Hb_000381_030 Hb_006938_010--Hb_007894_260 Hb_006949_030 Hb_006949_030 Hb_006938_010--Hb_006949_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.0491 1.10922 0.316955 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0583806 0 0 6.69579 2.11901

CAGE analysis