Hb_002929_060

Information

Type -
Description -
Location Contig2929: 38318-42009
Sequence    

Annotation

kegg
ID rcu:RCOM_1487480
description hypothetical protein
nr
ID XP_002515939.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID B9RQC0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1487480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30730: 39551-40920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002929_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012384_030 0.0818492924 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
3 Hb_000402_120 0.0969911712 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
4 Hb_001776_060 0.0982947065 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
5 Hb_170416_010 0.0993160777 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
6 Hb_001025_120 0.1006546953 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
7 Hb_002716_060 0.1022138391 - - carboxylesterase np, putative [Ricinus communis]
8 Hb_000115_280 0.1030250753 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
9 Hb_007007_120 0.1052600039 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
10 Hb_001226_150 0.1055490206 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
11 Hb_000390_230 0.105668956 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
12 Hb_032202_140 0.1062027885 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
13 Hb_171900_040 0.1069968636 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
14 Hb_000753_240 0.1075044231 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
15 Hb_007765_100 0.107794848 - - PREDICTED: helicase SKI2W [Jatropha curcas]
16 Hb_000144_070 0.1088165073 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000866_410 0.1089101232 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
18 Hb_000676_070 0.1089884595 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
19 Hb_000757_030 0.1093840946 - - radical sam protein, putative [Ricinus communis]
20 Hb_001761_120 0.1105270128 - - hypothetical protein JCGZ_22564 [Jatropha curcas]

Gene co-expression network

sample Hb_002929_060 Hb_002929_060 Hb_012384_030 Hb_012384_030 Hb_002929_060--Hb_012384_030 Hb_000402_120 Hb_000402_120 Hb_002929_060--Hb_000402_120 Hb_001776_060 Hb_001776_060 Hb_002929_060--Hb_001776_060 Hb_170416_010 Hb_170416_010 Hb_002929_060--Hb_170416_010 Hb_001025_120 Hb_001025_120 Hb_002929_060--Hb_001025_120 Hb_002716_060 Hb_002716_060 Hb_002929_060--Hb_002716_060 Hb_012384_030--Hb_000402_120 Hb_012384_030--Hb_001776_060 Hb_000866_410 Hb_000866_410 Hb_012384_030--Hb_000866_410 Hb_003929_280 Hb_003929_280 Hb_012384_030--Hb_003929_280 Hb_002217_110 Hb_002217_110 Hb_012384_030--Hb_002217_110 Hb_003927_040 Hb_003927_040 Hb_012384_030--Hb_003927_040 Hb_032264_060 Hb_032264_060 Hb_000402_120--Hb_032264_060 Hb_000402_120--Hb_001776_060 Hb_001636_050 Hb_001636_050 Hb_000402_120--Hb_001636_050 Hb_013394_030 Hb_013394_030 Hb_000402_120--Hb_013394_030 Hb_032202_080 Hb_032202_080 Hb_000402_120--Hb_032202_080 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_000144_070 Hb_000144_070 Hb_001776_060--Hb_000144_070 Hb_001776_060--Hb_032202_080 Hb_001776_060--Hb_002217_110 Hb_007290_030 Hb_007290_030 Hb_001776_060--Hb_007290_030 Hb_001761_120 Hb_001761_120 Hb_170416_010--Hb_001761_120 Hb_001226_150 Hb_001226_150 Hb_170416_010--Hb_001226_150 Hb_007765_100 Hb_007765_100 Hb_170416_010--Hb_007765_100 Hb_007007_120 Hb_007007_120 Hb_170416_010--Hb_007007_120 Hb_003531_080 Hb_003531_080 Hb_170416_010--Hb_003531_080 Hb_010931_070 Hb_010931_070 Hb_170416_010--Hb_010931_070 Hb_018790_020 Hb_018790_020 Hb_001025_120--Hb_018790_020 Hb_001025_120--Hb_002716_060 Hb_000676_070 Hb_000676_070 Hb_001025_120--Hb_000676_070 Hb_007894_150 Hb_007894_150 Hb_001025_120--Hb_007894_150 Hb_004807_020 Hb_004807_020 Hb_001025_120--Hb_004807_020 Hb_000028_520 Hb_000028_520 Hb_001025_120--Hb_000028_520 Hb_002716_060--Hb_018790_020 Hb_000476_060 Hb_000476_060 Hb_002716_060--Hb_000476_060 Hb_004109_320 Hb_004109_320 Hb_002716_060--Hb_004109_320 Hb_043792_010 Hb_043792_010 Hb_002716_060--Hb_043792_010 Hb_000282_090 Hb_000282_090 Hb_002716_060--Hb_000282_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4094 18.5535 27.8187 8.63977 21.2246 10.3381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.528 15.2941 17.0288 11.0909 18.4149

CAGE analysis