Hb_002936_010

Information

Type -
Description -
Location Contig2936: 17899-20938
Sequence    

Annotation

kegg
ID pxb:103949110
description uncharacterized LOC103949110
nr
ID XP_009358483.1
description PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID A0A067KQZ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03999 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30739: 17938-20911
cDNA
(Sanger)
(ID:Location)		 017_D22.ab1: 17976-20688

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002936_010 0.0 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
2 Hb_024958_010 0.0432765204 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
3 Hb_006570_080 0.0487053361 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
4 Hb_001359_050 0.0580997971 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005588_060 0.0598689829 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
6 Hb_000720_040 0.0615955535 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
7 Hb_003994_230 0.0651687081 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
8 Hb_006831_140 0.066322353 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
9 Hb_168978_010 0.0666274122 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
10 Hb_164390_010 0.0667480865 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
11 Hb_013738_020 0.0672892402 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
12 Hb_163175_010 0.0681664673 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
13 Hb_000173_280 0.0691963104 - - Speckle-type POZ protein, putative [Ricinus communis]
14 Hb_000270_310 0.0703172543 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
15 Hb_093458_040 0.0705394222 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
16 Hb_001278_100 0.0707515632 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
17 Hb_001221_110 0.072346183 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
18 Hb_002320_040 0.0725788642 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
19 Hb_000392_420 0.072700681 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
20 Hb_001959_110 0.0729490186 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002936_010 Hb_002936_010 Hb_024958_010 Hb_024958_010 Hb_002936_010--Hb_024958_010 Hb_006570_080 Hb_006570_080 Hb_002936_010--Hb_006570_080 Hb_001359_050 Hb_001359_050 Hb_002936_010--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_002936_010--Hb_005588_060 Hb_000720_040 Hb_000720_040 Hb_002936_010--Hb_000720_040 Hb_003994_230 Hb_003994_230 Hb_002936_010--Hb_003994_230 Hb_024958_010--Hb_001359_050 Hb_000684_380 Hb_000684_380 Hb_024958_010--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_024958_010--Hb_002320_040 Hb_008725_230 Hb_008725_230 Hb_024958_010--Hb_008725_230 Hb_024958_010--Hb_006570_080 Hb_006570_080--Hb_001359_050 Hb_006570_080--Hb_005588_060 Hb_000173_280 Hb_000173_280 Hb_006570_080--Hb_000173_280 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_001359_050--Hb_000173_280 Hb_003058_120 Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_005588_060--Hb_000173_280 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040 Hb_000300_500 Hb_000300_500 Hb_000720_040--Hb_000300_500 Hb_000720_040--Hb_003994_230 Hb_052805_010 Hb_052805_010 Hb_000720_040--Hb_052805_010 Hb_000948_230 Hb_000948_230 Hb_000720_040--Hb_000948_230 Hb_000783_010 Hb_000783_010 Hb_000720_040--Hb_000783_010 Hb_003994_230--Hb_000948_230 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3032 20.7565 27.5566 30.6397 19.9769 20.7799
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2031 31.3614 18.5669 28.4947 15.6202

CAGE analysis