Hb_002936_050

Information

Type transcription factor
Description TF Family: ARR-B
Location Contig2936: 30663-36514
Sequence    

Annotation

kegg
ID rcu:RCOM_0700880
description two-component system sensor histidine kinase/response regulator, putative
nr
ID XP_012071467.1
description PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
swissprot
ID P62598
description Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2
trembl
ID A0A067KUK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04001 PE=4 SV=1
Gene Ontology
ID GO:0003677
description two-component response regulator arr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30744: 33608-33773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002936_050 0.0 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
2 Hb_042729_010 0.0943382546 - - -
3 Hb_000419_040 0.0946066378 - - chorismate synthase [Hevea brasiliensis]
4 Hb_000003_840 0.0953729794 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
5 Hb_012522_030 0.0962424281 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_001278_050 0.0974729178 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
7 Hb_002897_060 0.0976499243 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
8 Hb_002685_090 0.1121391778 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
9 Hb_001232_130 0.1134894329 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
10 Hb_009265_060 0.1137120689 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
11 Hb_007666_020 0.114936607 - - alkaline phytoceramidase, putative [Ricinus communis]
12 Hb_007229_060 0.1156120727 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
13 Hb_012725_110 0.1156547784 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
14 Hb_000032_220 0.1164397431 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
15 Hb_002307_090 0.1189753438 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
16 Hb_015934_020 0.1211419825 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
17 Hb_003943_030 0.1214744239 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
18 Hb_000861_040 0.1216901609 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
19 Hb_002291_030 0.1223666473 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
20 Hb_002387_060 0.1231522001 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002936_050 Hb_002936_050 Hb_042729_010 Hb_042729_010 Hb_002936_050--Hb_042729_010 Hb_000419_040 Hb_000419_040 Hb_002936_050--Hb_000419_040 Hb_000003_840 Hb_000003_840 Hb_002936_050--Hb_000003_840 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002897_060 Hb_002897_060 Hb_002936_050--Hb_002897_060 Hb_004206_030 Hb_004206_030 Hb_042729_010--Hb_004206_030 Hb_000934_030 Hb_000934_030 Hb_042729_010--Hb_000934_030 Hb_012725_110 Hb_012725_110 Hb_042729_010--Hb_012725_110 Hb_042729_010--Hb_000419_040 Hb_042729_010--Hb_000003_840 Hb_000419_040--Hb_012522_030 Hb_009265_060 Hb_009265_060 Hb_000419_040--Hb_009265_060 Hb_001863_480 Hb_001863_480 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030 Hb_002685_090 Hb_002685_090 Hb_000003_840--Hb_002685_090 Hb_143629_090 Hb_143629_090 Hb_000003_840--Hb_143629_090 Hb_080477_050 Hb_080477_050 Hb_000003_840--Hb_080477_050 Hb_000003_840--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_012522_030--Hb_002387_060 Hb_002326_030 Hb_002326_030 Hb_012522_030--Hb_002326_030 Hb_002291_030 Hb_002291_030 Hb_012522_030--Hb_002291_030 Hb_001711_030 Hb_001711_030 Hb_012522_030--Hb_001711_030 Hb_002282_020 Hb_002282_020 Hb_012522_030--Hb_002282_020 Hb_001329_210 Hb_001329_210 Hb_001278_050--Hb_001329_210 Hb_002078_460 Hb_002078_460 Hb_001278_050--Hb_002078_460 Hb_000032_220 Hb_000032_220 Hb_001278_050--Hb_000032_220 Hb_007666_020 Hb_007666_020 Hb_001278_050--Hb_007666_020 Hb_001278_050--Hb_002897_060 Hb_002392_040 Hb_002392_040 Hb_002897_060--Hb_002392_040 Hb_004882_020 Hb_004882_020 Hb_002897_060--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4122 4.11767 1.42171 0.971421 10.8153 11.8792
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.9612 25.9183 41.2217 5.30539 1.41224

CAGE analysis