Hb_002942_020

Information

Type -
Description -
Location Contig2942: 8020-14927
Sequence    

Annotation

kegg
ID rcu:RCOM_1503520
description nucleotide binding protein, putative
nr
ID XP_002511089.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RA64
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1503520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30766: 7971-12000 , PASA_asmbl_30767: 13377-33173
cDNA
(Sanger)
(ID:Location)		 016_K23.ab1: 10385-12000 , 038_M12.ab1: 10408-12000 , 047_O04.ab1: 10358-12000

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_020 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_027892_060 0.0598546449 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
3 Hb_003125_040 0.0695929703 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
4 Hb_118419_020 0.0748931723 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
5 Hb_003540_040 0.0801484241 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
6 Hb_168918_020 0.0817651465 - - pectin acetylesterase, putative [Ricinus communis]
7 Hb_000905_190 0.0864521599 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
8 Hb_000392_270 0.0864663073 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
9 Hb_000270_840 0.0873055154 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
10 Hb_000270_360 0.0883822373 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
11 Hb_060809_010 0.0885474712 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
12 Hb_125000_010 0.0889118803 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
13 Hb_000172_370 0.0904879353 - - -
14 Hb_003106_130 0.0905477939 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
15 Hb_006569_020 0.0910165181 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
16 Hb_005928_060 0.0913083717 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
17 Hb_001214_130 0.0930747623 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
18 Hb_001776_110 0.0932430222 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
19 Hb_000019_230 0.0932919023 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
20 Hb_000317_430 0.0933820936 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_020 Hb_002942_020 Hb_027892_060 Hb_027892_060 Hb_002942_020--Hb_027892_060 Hb_003125_040 Hb_003125_040 Hb_002942_020--Hb_003125_040 Hb_118419_020 Hb_118419_020 Hb_002942_020--Hb_118419_020 Hb_003540_040 Hb_003540_040 Hb_002942_020--Hb_003540_040 Hb_168918_020 Hb_168918_020 Hb_002942_020--Hb_168918_020 Hb_000905_190 Hb_000905_190 Hb_002942_020--Hb_000905_190 Hb_017895_050 Hb_017895_050 Hb_027892_060--Hb_017895_050 Hb_033491_010 Hb_033491_010 Hb_027892_060--Hb_033491_010 Hb_118977_020 Hb_118977_020 Hb_027892_060--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_027892_060--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_027892_060--Hb_001369_060 Hb_060809_010 Hb_060809_010 Hb_003125_040--Hb_060809_010 Hb_006569_020 Hb_006569_020 Hb_003125_040--Hb_006569_020 Hb_000928_240 Hb_000928_240 Hb_003125_040--Hb_000928_240 Hb_000317_430 Hb_000317_430 Hb_003125_040--Hb_000317_430 Hb_003125_040--Hb_118419_020 Hb_010436_070 Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_118419_020--Hb_000317_430 Hb_000175_070 Hb_000175_070 Hb_118419_020--Hb_000175_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_007193_100 Hb_007193_100 Hb_118419_020--Hb_007193_100 Hb_001776_110 Hb_001776_110 Hb_003540_040--Hb_001776_110 Hb_003540_040--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_003540_040--Hb_022250_040 Hb_000392_270 Hb_000392_270 Hb_003540_040--Hb_000392_270 Hb_009711_030 Hb_009711_030 Hb_003540_040--Hb_009711_030 Hb_003540_040--Hb_002097_110 Hb_012340_030 Hb_012340_030 Hb_168918_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_168918_020--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_168918_020--Hb_000017_120 Hb_002997_170 Hb_002997_170 Hb_168918_020--Hb_002997_170 Hb_168918_020--Hb_001776_110 Hb_168918_020--Hb_118419_020 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_000905_190--Hb_002997_170 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5566 3.70095 4.6768 3.87119 20.5119 21.7385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2416 18.2678 10.4263 3.70128 4.29878

CAGE analysis