Hb_002942_030

Information

Type -
Description -
Location Contig2942: 32715-34662
Sequence    

Annotation

kegg
ID mtr:MTR_8g100180
description hypothetical protein
nr
ID KCW46144.1
description hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A058ZXF5
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K000651 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30767: 13377-33173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_030 0.0 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
2 Hb_001504_170 0.0825219513 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
3 Hb_013479_020 0.086193238 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_004852_020 0.090169769 - - -
5 Hb_026048_090 0.0934458769 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000175_520 0.0943931325 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_001433_170 0.099346565 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
8 Hb_002374_340 0.1004597522 - - Two-component response regulator ARR9, putative [Ricinus communis]
9 Hb_000179_250 0.1005377263 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
10 Hb_003050_040 0.1019542455 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
11 Hb_098709_010 0.1026291738 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
12 Hb_005245_090 0.1049636902 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
13 Hb_009510_030 0.1080592822 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
14 Hb_000771_140 0.1089345263 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
15 Hb_000933_140 0.1089527645 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
16 Hb_002835_190 0.1093804872 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
17 Hb_002681_140 0.1095793306 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
18 Hb_000176_140 0.1119182665 - - PREDICTED: bystin [Jatropha curcas]
19 Hb_003453_010 0.1125820631 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007317_220 0.1127942041 - - hypothetical protein JCGZ_12701 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_030 Hb_002942_030 Hb_001504_170 Hb_001504_170 Hb_002942_030--Hb_001504_170 Hb_013479_020 Hb_013479_020 Hb_002942_030--Hb_013479_020 Hb_004852_020 Hb_004852_020 Hb_002942_030--Hb_004852_020 Hb_026048_090 Hb_026048_090 Hb_002942_030--Hb_026048_090 Hb_000175_520 Hb_000175_520 Hb_002942_030--Hb_000175_520 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170 Hb_001504_170--Hb_013479_020 Hb_002955_030 Hb_002955_030 Hb_001504_170--Hb_002955_030 Hb_003786_110 Hb_003786_110 Hb_001504_170--Hb_003786_110 Hb_000345_560 Hb_000345_560 Hb_001504_170--Hb_000345_560 Hb_000329_610 Hb_000329_610 Hb_001504_170--Hb_000329_610 Hb_019654_070 Hb_019654_070 Hb_013479_020--Hb_019654_070 Hb_000028_050 Hb_000028_050 Hb_013479_020--Hb_000028_050 Hb_000085_340 Hb_000085_340 Hb_013479_020--Hb_000085_340 Hb_003627_020 Hb_003627_020 Hb_013479_020--Hb_003627_020 Hb_004852_020--Hb_000175_520 Hb_007317_220 Hb_007317_220 Hb_004852_020--Hb_007317_220 Hb_023675_010 Hb_023675_010 Hb_004852_020--Hb_023675_010 Hb_002518_250 Hb_002518_250 Hb_004852_020--Hb_002518_250 Hb_001248_020 Hb_001248_020 Hb_004852_020--Hb_001248_020 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_000175_520--Hb_002518_250 Hb_012395_100 Hb_012395_100 Hb_000175_520--Hb_012395_100 Hb_000933_140 Hb_000933_140 Hb_000175_520--Hb_000933_140 Hb_000175_520--Hb_007317_220 Hb_001433_170--Hb_000057_060 Hb_001433_170--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_001433_170--Hb_000179_250 Hb_000176_140 Hb_000176_140 Hb_001433_170--Hb_000176_140 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.7034 7.28935 4.55671 4.05669 99.0228 106.729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
85.8896 45.6433 39.7904 11.5202 4.18029

CAGE analysis