Hb_002942_060

Information

Type -
Description -
Location Contig2942: 44946-54990
Sequence    

Annotation

kegg
ID rcu:RCOM_1503540
description RNA-binding protein, putative
nr
ID XP_002511091.1
description RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q64M78
description Protein MEI2-like 4 OS=Oryza sativa subsp. japonica GN=ML4 PE=2 SV=1
trembl
ID B9RA66
description RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1503540 PE=4 SV=1
Gene Ontology
ID GO:0000166
description protein mei2-like 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30773: 44994-55107 , PASA_asmbl_30774: 44994-55107 , PASA_asmbl_30776: 49020-49311 , PASA_asmbl_30778: 53743-55069
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_060 0.0 - - RNA-binding protein, putative [Ricinus communis]
2 Hb_002398_030 0.077236596 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_000445_050 0.0781582805 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
4 Hb_008120_030 0.0793650426 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
5 Hb_000208_260 0.0794318842 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
6 Hb_058999_030 0.0849033284 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
7 Hb_007592_030 0.0857539569 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_009049_020 0.0881806142 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
9 Hb_003549_090 0.0936437637 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
10 Hb_002836_140 0.0944687038 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
11 Hb_003376_050 0.0959999812 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
12 Hb_000606_090 0.0978886561 - - Far upstream element-binding protein, putative [Ricinus communis]
13 Hb_000777_050 0.1001025493 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
14 Hb_000797_050 0.1003595865 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
15 Hb_003813_040 0.1010517909 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
16 Hb_004007_220 0.1012506849 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
17 Hb_000141_250 0.1031199844 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
18 Hb_004994_040 0.1032400419 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
19 Hb_008556_030 0.1034822507 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
20 Hb_001377_320 0.1040864514 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]

Gene co-expression network

sample Hb_002942_060 Hb_002942_060 Hb_002398_030 Hb_002398_030 Hb_002942_060--Hb_002398_030 Hb_000445_050 Hb_000445_050 Hb_002942_060--Hb_000445_050 Hb_008120_030 Hb_008120_030 Hb_002942_060--Hb_008120_030 Hb_000208_260 Hb_000208_260 Hb_002942_060--Hb_000208_260 Hb_058999_030 Hb_058999_030 Hb_002942_060--Hb_058999_030 Hb_007592_030 Hb_007592_030 Hb_002942_060--Hb_007592_030 Hb_002398_030--Hb_008120_030 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_000445_050--Hb_007592_030 Hb_000445_050--Hb_008120_030 Hb_009049_020 Hb_009049_020 Hb_000445_050--Hb_009049_020 Hb_000445_050--Hb_058999_030 Hb_008120_030--Hb_001635_160 Hb_011310_210 Hb_011310_210 Hb_008120_030--Hb_011310_210 Hb_000777_050 Hb_000777_050 Hb_008120_030--Hb_000777_050 Hb_008120_030--Hb_003549_090 Hb_000345_380 Hb_000345_380 Hb_008120_030--Hb_000345_380 Hb_000208_260--Hb_009049_020 Hb_000208_260--Hb_058999_030 Hb_000208_260--Hb_002398_030 Hb_001188_060 Hb_001188_060 Hb_000208_260--Hb_001188_060 Hb_002248_110 Hb_002248_110 Hb_000208_260--Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_058999_030--Hb_003549_090 Hb_058999_030--Hb_007592_030 Hb_004994_040 Hb_004994_040 Hb_007592_030--Hb_004994_040 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_007592_030--Hb_002398_030 Hb_007592_030--Hb_017700_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7079 9.55779 23.8179 19.9622 18.9307 33.1652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7123 7.98426 15.9695 10.9306 13.7582

CAGE analysis