Hb_002942_070

Information

Type -
Description -
Location Contig2942: 72633-74409
Sequence    

Annotation

kegg
ID pop:POPTR_0015s11720g
description POPTRDRAFT_575456; hypothetical protein
nr
ID XP_012090588.1
description PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
swissprot
ID Q6NRI8
description Centromere protein S OS=Xenopus laevis GN=apitd1 PE=2 SV=1
trembl
ID B9IFK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s11720g PE=4 SV=2
Gene Ontology
ID GO:0046982
description centromere protein s

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30779: 73013-74392
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_070 0.0 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
2 Hb_003633_130 0.0900801059 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
3 Hb_000172_120 0.0992288666 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
4 Hb_000327_210 0.0997897567 - - -
5 Hb_004502_030 0.1007210325 - - unknown [Populus trichocarpa]
6 Hb_004813_010 0.1067774038 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000062_230 0.1068834282 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
8 Hb_007992_030 0.1069842806 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
9 Hb_001514_020 0.1071431373 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
10 Hb_000847_070 0.107817452 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
11 Hb_000345_560 0.108761214 - - -
12 Hb_007441_340 0.1088653979 - - protein with unknown function [Ricinus communis]
13 Hb_002044_090 0.1105664002 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
14 Hb_004295_020 0.1109245972 - - thioredoxin II-type 1 [Hevea brasiliensis]
15 Hb_004096_170 0.1131832866 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
16 Hb_001623_370 0.1157752647 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001269_150 0.115852308 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
18 Hb_001956_120 0.117383666 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001493_100 0.1181322922 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
20 Hb_000038_130 0.1195056327 - - -

Gene co-expression network

sample Hb_002942_070 Hb_002942_070 Hb_003633_130 Hb_003633_130 Hb_002942_070--Hb_003633_130 Hb_000172_120 Hb_000172_120 Hb_002942_070--Hb_000172_120 Hb_000327_210 Hb_000327_210 Hb_002942_070--Hb_000327_210 Hb_004502_030 Hb_004502_030 Hb_002942_070--Hb_004502_030 Hb_004813_010 Hb_004813_010 Hb_002942_070--Hb_004813_010 Hb_000062_230 Hb_000062_230 Hb_002942_070--Hb_000062_230 Hb_119583_010 Hb_119583_010 Hb_003633_130--Hb_119583_010 Hb_003633_130--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_003633_130--Hb_007992_030 Hb_007632_250 Hb_007632_250 Hb_003633_130--Hb_007632_250 Hb_000847_070 Hb_000847_070 Hb_003633_130--Hb_000847_070 Hb_007441_340 Hb_007441_340 Hb_000172_120--Hb_007441_340 Hb_004096_170 Hb_004096_170 Hb_000172_120--Hb_004096_170 Hb_003453_020 Hb_003453_020 Hb_000172_120--Hb_003453_020 Hb_001269_150 Hb_001269_150 Hb_000172_120--Hb_001269_150 Hb_002400_220 Hb_002400_220 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040 Hb_005015_010 Hb_005015_010 Hb_000327_210--Hb_005015_010 Hb_000768_030 Hb_000768_030 Hb_000327_210--Hb_000768_030 Hb_000327_210--Hb_000172_120 Hb_000327_210--Hb_004813_010 Hb_000327_210--Hb_000062_230 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_001493_100 Hb_001493_100 Hb_004813_010--Hb_001493_100 Hb_004813_010--Hb_001514_020 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_004813_010--Hb_000847_070 Hb_004813_010--Hb_000062_230 Hb_000062_230--Hb_002044_090 Hb_000062_230--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_000062_230--Hb_005754_020 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_003352_050 Hb_003352_050 Hb_000062_230--Hb_003352_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.676 5.47024 6.97555 4.44544 37.9437 33.0271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3718 21.9408 12.0994 2.11282 0.2354

CAGE analysis