Hb_002942_080

Information

Type -
Description -
Location Contig2942: 80946-88954
Sequence    

Annotation

kegg
ID rcu:RCOM_1503780
description Signal recognition particle 68 kDa protein, putative
nr
ID XP_012090592.1
description PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
swissprot
ID Q00004
description Signal recognition particle subunit SRP68 OS=Canis familiaris GN=SRP68 PE=1 SV=1
trembl
ID A0A067JRB7
description Signal recognition particle subunit SRP68 OS=Jatropha curcas GN=JCGZ_26371 PE=3 SV=1
Gene Ontology
ID GO:0005786
description signal recognition particle subunit srp68

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30780: 80770-88988 , PASA_asmbl_30781: 80797-88988
cDNA
(Sanger)
(ID:Location)		 001_P10.ab1: 80770-84367

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_080 0.0 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
2 Hb_007668_040 0.0364696001 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
3 Hb_009913_050 0.0647225173 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
4 Hb_003006_060 0.0647251987 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
5 Hb_002675_060 0.0757519759 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
6 Hb_005214_060 0.0799061992 - - catalytic, putative [Ricinus communis]
7 Hb_024990_010 0.0808543805 - - PREDICTED: la protein 1 [Jatropha curcas]
8 Hb_001341_050 0.0814059996 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
9 Hb_025557_020 0.0820424648 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
10 Hb_000116_170 0.0824347955 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
11 Hb_000364_060 0.0838143052 - - JHL03K20.4 [Jatropha curcas]
12 Hb_002652_040 0.0842997202 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
13 Hb_001221_040 0.0892964817 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
14 Hb_010423_020 0.0897242904 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
15 Hb_000104_080 0.0897404628 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
16 Hb_000424_230 0.0902628065 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
17 Hb_000331_190 0.0912871398 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
18 Hb_007668_020 0.0914749042 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
19 Hb_000035_040 0.0925936359 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
20 Hb_004195_280 0.0926743178 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_002942_080 Hb_002942_080 Hb_007668_040 Hb_007668_040 Hb_002942_080--Hb_007668_040 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_003006_060 Hb_003006_060 Hb_002942_080--Hb_003006_060 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_024990_010 Hb_024990_010 Hb_002942_080--Hb_024990_010 Hb_012132_040 Hb_012132_040 Hb_007668_040--Hb_012132_040 Hb_000364_060 Hb_000364_060 Hb_007668_040--Hb_000364_060 Hb_001341_050 Hb_001341_050 Hb_007668_040--Hb_001341_050 Hb_007668_040--Hb_024990_010 Hb_007668_040--Hb_003006_060 Hb_009913_050--Hb_005214_060 Hb_000318_140 Hb_000318_140 Hb_009913_050--Hb_000318_140 Hb_001396_290 Hb_001396_290 Hb_009913_050--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_009913_050--Hb_002048_090 Hb_025557_020 Hb_025557_020 Hb_009913_050--Hb_025557_020 Hb_004678_060 Hb_004678_060 Hb_003006_060--Hb_004678_060 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_010423_020 Hb_010423_020 Hb_003006_060--Hb_010423_020 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_009265_080 Hb_009265_080 Hb_003006_060--Hb_009265_080 Hb_001221_040 Hb_001221_040 Hb_002675_060--Hb_001221_040 Hb_000213_070 Hb_000213_070 Hb_002675_060--Hb_000213_070 Hb_000035_040 Hb_000035_040 Hb_002675_060--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_002675_060--Hb_002652_040 Hb_000331_190 Hb_000331_190 Hb_002675_060--Hb_000331_190 Hb_005214_060--Hb_002675_060 Hb_005214_060--Hb_000213_070 Hb_005214_060--Hb_000331_190 Hb_005214_060--Hb_024990_010 Hb_024990_010--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_024990_010--Hb_000531_090 Hb_125092_020 Hb_125092_020 Hb_024990_010--Hb_125092_020 Hb_000340_160 Hb_000340_160 Hb_024990_010--Hb_000340_160 Hb_024990_010--Hb_001221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.267 16.6137 21.265 15.9471 64.5739 69.8664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.6472 18.4791 14.0829 22.6726 12.393

CAGE analysis