Hb_002942_100

Information

Type -
Description -
Location Contig2942: 96917-100012
Sequence    

Annotation

kegg
ID rcu:RCOM_1503920
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090594.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
swissprot
ID Q9FIT7
description Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1
trembl
ID B9RA74
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1503920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30788: 96835-97013 , PASA_asmbl_30789: 97049-97324 , PASA_asmbl_30793: 99715-100057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
2 Hb_003253_040 0.0588378965 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
3 Hb_002311_040 0.0589482969 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
4 Hb_006915_030 0.0626011241 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
5 Hb_004143_130 0.0652616157 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
6 Hb_012022_090 0.067099485 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
7 Hb_001341_170 0.0688451566 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
8 Hb_001198_100 0.0693679149 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
9 Hb_002740_110 0.0717092404 - - PREDICTED: phytochrome A [Jatropha curcas]
10 Hb_006649_050 0.0720961437 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
11 Hb_000009_560 0.0731135628 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
12 Hb_000245_040 0.0736834004 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
13 Hb_002063_020 0.0741120962 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
14 Hb_000028_280 0.0753926518 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
15 Hb_002740_180 0.0763666192 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000890_210 0.076570555 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
17 Hb_001085_060 0.0769127999 - - PREDICTED: pentatricopeptide repeat-containing protein At1g04840 [Jatropha curcas]
18 Hb_004225_050 0.0774859432 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
19 Hb_007441_220 0.0791710192 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
20 Hb_001199_100 0.0798260342 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_100 Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_002942_100--Hb_003253_040 Hb_002311_040 Hb_002311_040 Hb_002942_100--Hb_002311_040 Hb_006915_030 Hb_006915_030 Hb_002942_100--Hb_006915_030 Hb_004143_130 Hb_004143_130 Hb_002942_100--Hb_004143_130 Hb_012022_090 Hb_012022_090 Hb_002942_100--Hb_012022_090 Hb_001341_170 Hb_001341_170 Hb_002942_100--Hb_001341_170 Hb_002740_110 Hb_002740_110 Hb_003253_040--Hb_002740_110 Hb_010174_110 Hb_010174_110 Hb_003253_040--Hb_010174_110 Hb_001199_100 Hb_001199_100 Hb_003253_040--Hb_001199_100 Hb_002063_020 Hb_002063_020 Hb_003253_040--Hb_002063_020 Hb_003253_040--Hb_004143_130 Hb_000723_130 Hb_000723_130 Hb_002311_040--Hb_000723_130 Hb_004684_010 Hb_004684_010 Hb_002311_040--Hb_004684_010 Hb_009486_200 Hb_009486_200 Hb_002311_040--Hb_009486_200 Hb_008500_010 Hb_008500_010 Hb_002311_040--Hb_008500_010 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100 Hb_006915_030--Hb_001198_100 Hb_000571_110 Hb_000571_110 Hb_006915_030--Hb_000571_110 Hb_006915_030--Hb_000723_130 Hb_009548_020 Hb_009548_020 Hb_006915_030--Hb_009548_020 Hb_004225_050 Hb_004225_050 Hb_006915_030--Hb_004225_050 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_004143_130--Hb_010174_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_002811_060 Hb_002811_060 Hb_012022_090--Hb_002811_060 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_000116_500 Hb_000116_500 Hb_012022_090--Hb_000116_500 Hb_012022_090--Hb_009548_020 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_004724_150 Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000890_210 Hb_000890_210 Hb_001341_170--Hb_000890_210 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74644 3.95264 1.69298 3.33874 4.0987 4.87825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04579 3.08163 6.72238 4.07346 3.96133

CAGE analysis