Hb_002942_140

Information

Type -
Description -
Location Contig2942: 142590-150522
Sequence    

Annotation

kegg
ID rcu:RCOM_1504160
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_012090601.1
description PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
swissprot
ID Q75QN6
description Dual specificity protein phosphatase PHS1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1
trembl
ID A0A067JRC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26381 PE=4 SV=1
Gene Ontology
ID GO:0004725
description dual specificity protein phosphatase phs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30802: 148096-149768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_140 0.0 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
2 Hb_004545_080 0.1013684471 - - protein with unknown function [Ricinus communis]
3 Hb_003050_360 0.1070796276 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
4 Hb_000230_530 0.1139937013 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003175_070 0.1141696154 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]
6 Hb_112064_010 0.1185966173 - - PREDICTED: inositol-phosphate phosphatase [Jatropha curcas]
7 Hb_010632_020 0.1194469516 - - hypothetical protein POPTR_0006s185902g, partial [Populus trichocarpa]
8 Hb_002432_050 0.1206323595 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
9 Hb_000996_080 0.1231782538 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
10 Hb_005527_060 0.1245592002 - - malic enzyme, putative [Ricinus communis]
11 Hb_000012_320 0.1248117329 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
12 Hb_001360_030 0.1248395897 - - PREDICTED: ACT domain-containing protein ACR10 [Jatropha curcas]
13 Hb_001775_120 0.1255989531 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
14 Hb_001001_120 0.1261775786 - - protein phosphatase, putative [Ricinus communis]
15 Hb_009296_020 0.1272050104 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
16 Hb_000310_060 0.1286816566 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
17 Hb_000940_030 0.1310039851 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
18 Hb_004855_020 0.1318030214 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
19 Hb_000594_060 0.1325342701 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
20 Hb_001117_080 0.1336509128 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_140 Hb_002942_140 Hb_004545_080 Hb_004545_080 Hb_002942_140--Hb_004545_080 Hb_003050_360 Hb_003050_360 Hb_002942_140--Hb_003050_360 Hb_000230_530 Hb_000230_530 Hb_002942_140--Hb_000230_530 Hb_003175_070 Hb_003175_070 Hb_002942_140--Hb_003175_070 Hb_112064_010 Hb_112064_010 Hb_002942_140--Hb_112064_010 Hb_010632_020 Hb_010632_020 Hb_002942_140--Hb_010632_020 Hb_000032_410 Hb_000032_410 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_004545_080--Hb_003050_360 Hb_000689_050 Hb_000689_050 Hb_004545_080--Hb_000689_050 Hb_004545_080--Hb_003175_070 Hb_003050_360--Hb_000689_050 Hb_007101_260 Hb_007101_260 Hb_003050_360--Hb_007101_260 Hb_003050_360--Hb_112064_010 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_101334_020 Hb_101334_020 Hb_000230_530--Hb_101334_020 Hb_009296_020 Hb_009296_020 Hb_000230_530--Hb_009296_020 Hb_002010_090 Hb_002010_090 Hb_000230_530--Hb_002010_090 Hb_000594_060 Hb_000594_060 Hb_000230_530--Hb_000594_060 Hb_000510_190 Hb_000510_190 Hb_000230_530--Hb_000510_190 Hb_000496_130 Hb_000496_130 Hb_000230_530--Hb_000496_130 Hb_000414_080 Hb_000414_080 Hb_003175_070--Hb_000414_080 Hb_003175_070--Hb_000594_060 Hb_003847_040 Hb_003847_040 Hb_003175_070--Hb_003847_040 Hb_007594_080 Hb_007594_080 Hb_003175_070--Hb_007594_080 Hb_002675_080 Hb_002675_080 Hb_003175_070--Hb_002675_080 Hb_001360_030 Hb_001360_030 Hb_112064_010--Hb_001360_030 Hb_000635_050 Hb_000635_050 Hb_112064_010--Hb_000635_050 Hb_034579_020 Hb_034579_020 Hb_112064_010--Hb_034579_020 Hb_000115_360 Hb_000115_360 Hb_112064_010--Hb_000115_360 Hb_001365_030 Hb_001365_030 Hb_010632_020--Hb_001365_030 Hb_010632_020--Hb_001360_030 Hb_000940_030 Hb_000940_030 Hb_010632_020--Hb_000940_030 Hb_002374_450 Hb_002374_450 Hb_010632_020--Hb_002374_450 Hb_003053_070 Hb_003053_070 Hb_010632_020--Hb_003053_070 Hb_005276_070 Hb_005276_070 Hb_010632_020--Hb_005276_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.514315 1.00108 4.1854 2.45792 0.401746 0.154525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.217439 0.307995 0.349142 1.8731 2.79895

CAGE analysis