Hb_002942_170

Information

Type -
Description -
Location Contig2942: 166794-167414
Sequence    

Annotation

kegg
ID rcu:RCOM_1504200
description acyl carrier protein, putative (EC:1.3.1.74)
nr
ID XP_002511107.1
description acyl carrier protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RA82
description Acyl carrier protein OS=Ricinus communis GN=RCOM_1504200 PE=3 SV=1
Gene Ontology
ID GO:0006633
description acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_170 0.0 - - acyl carrier protein, putative [Ricinus communis]
2 Hb_001329_010 0.1598497655 - - zinc finger protein, putative [Ricinus communis]
3 Hb_002811_220 0.1693644067 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
4 Hb_022425_020 0.180848124 - - -
5 Hb_173638_010 0.185664066 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_007904_050 0.1937490098 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
7 Hb_001366_280 0.1966527864 - - PREDICTED: uncharacterized protein LOC105642732 [Jatropha curcas]
8 Hb_115823_010 0.2087365811 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000107_670 0.215477869 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
10 Hb_004619_090 0.2204986951 - - conserved hypothetical protein [Ricinus communis]
11 Hb_021576_050 0.2208288178 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
12 Hb_000656_320 0.2215321323 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
13 Hb_000069_510 0.2271465467 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
14 Hb_003813_110 0.2282099959 - - conserved hypothetical protein [Ricinus communis]
15 Hb_072201_010 0.2282420384 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
16 Hb_007413_020 0.2302561041 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007617_040 0.230639421 - - PREDICTED: syntaxin-112-like [Jatropha curcas]
18 Hb_002636_140 0.2313472298 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
19 Hb_000002_430 0.2328983435 - - PREDICTED: FHA domain-containing protein At4g14490 [Populus euphratica]
20 Hb_003750_090 0.2335474711 - - BnaC02g34020D [Brassica napus]

Gene co-expression network

sample Hb_002942_170 Hb_002942_170 Hb_001329_010 Hb_001329_010 Hb_002942_170--Hb_001329_010 Hb_002811_220 Hb_002811_220 Hb_002942_170--Hb_002811_220 Hb_022425_020 Hb_022425_020 Hb_002942_170--Hb_022425_020 Hb_173638_010 Hb_173638_010 Hb_002942_170--Hb_173638_010 Hb_007904_050 Hb_007904_050 Hb_002942_170--Hb_007904_050 Hb_001366_280 Hb_001366_280 Hb_002942_170--Hb_001366_280 Hb_000656_320 Hb_000656_320 Hb_001329_010--Hb_000656_320 Hb_013344_010 Hb_013344_010 Hb_001329_010--Hb_013344_010 Hb_000556_130 Hb_000556_130 Hb_001329_010--Hb_000556_130 Hb_003813_110 Hb_003813_110 Hb_001329_010--Hb_003813_110 Hb_072201_010 Hb_072201_010 Hb_001329_010--Hb_072201_010 Hb_000002_430 Hb_000002_430 Hb_002811_220--Hb_000002_430 Hb_000416_080 Hb_000416_080 Hb_002811_220--Hb_000416_080 Hb_003750_090 Hb_003750_090 Hb_002811_220--Hb_003750_090 Hb_000120_630 Hb_000120_630 Hb_002811_220--Hb_000120_630 Hb_059567_010 Hb_059567_010 Hb_002811_220--Hb_059567_010 Hb_002636_140 Hb_002636_140 Hb_022425_020--Hb_002636_140 Hb_002108_020 Hb_002108_020 Hb_022425_020--Hb_002108_020 Hb_022425_020--Hb_001366_280 Hb_012675_020 Hb_012675_020 Hb_022425_020--Hb_012675_020 Hb_009225_030 Hb_009225_030 Hb_022425_020--Hb_009225_030 Hb_007413_020 Hb_007413_020 Hb_173638_010--Hb_007413_020 Hb_000362_140 Hb_000362_140 Hb_173638_010--Hb_000362_140 Hb_173638_010--Hb_022425_020 Hb_173638_010--Hb_007904_050 Hb_173638_010--Hb_002811_220 Hb_115823_010 Hb_115823_010 Hb_007904_050--Hb_115823_010 Hb_005181_020 Hb_005181_020 Hb_007904_050--Hb_005181_020 Hb_141199_010 Hb_141199_010 Hb_007904_050--Hb_141199_010 Hb_007904_050--Hb_022425_020 Hb_046204_010 Hb_046204_010 Hb_001366_280--Hb_046204_010 Hb_007304_020 Hb_007304_020 Hb_001366_280--Hb_007304_020 Hb_021576_050 Hb_021576_050 Hb_001366_280--Hb_021576_050 Hb_000035_230 Hb_000035_230 Hb_001366_280--Hb_000035_230 Hb_000138_120 Hb_000138_120 Hb_001366_280--Hb_000138_120 Hb_034498_010 Hb_034498_010 Hb_001366_280--Hb_034498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320432 0.12495 18.5554 12.7659 0.277813 3.24746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.255403 0 0.351243 0.407238

CAGE analysis