Hb_002942_220

Information

Type -
Description -
Location Contig2942: 209811-210764
Sequence    

Annotation

kegg
ID rcu:RCOM_1504550
description hypothetical protein
nr
ID XP_012090617.1
description PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
swissprot
ID Q99MQ1
description Protein bicaudal C homolog 1 OS=Mus musculus GN=Bicc1 PE=1 SV=1
trembl
ID A0A067JFD7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26388 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30817: 209673-210993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_220 0.0 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
2 Hb_000139_250 0.0547465752 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
3 Hb_010222_080 0.0592903034 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
4 Hb_002400_180 0.0738968372 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004678_020 0.0743112219 - - PREDICTED: protein YIF1B [Jatropha curcas]
6 Hb_017168_010 0.0766240803 - - conserved hypothetical protein [Ricinus communis]
7 Hb_144787_030 0.0781131477 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
8 Hb_003581_120 0.0801216001 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
9 Hb_000803_300 0.0801885354 - - nuclear movement protein nudc, putative [Ricinus communis]
10 Hb_001975_020 0.0809693857 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
11 Hb_000236_280 0.0811025853 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
12 Hb_004241_070 0.0812312425 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
13 Hb_001584_290 0.0816807268 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_000684_420 0.0830030325 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
15 Hb_000236_100 0.0838944723 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
16 Hb_000424_010 0.0839231178 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
17 Hb_001226_180 0.0839511923 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
18 Hb_000001_180 0.0839903271 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
19 Hb_004724_360 0.0844370535 - - OTU-like cysteine protease family protein [Populus trichocarpa]
20 Hb_000327_310 0.0847041427 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_220 Hb_002942_220 Hb_000139_250 Hb_000139_250 Hb_002942_220--Hb_000139_250 Hb_010222_080 Hb_010222_080 Hb_002942_220--Hb_010222_080 Hb_002400_180 Hb_002400_180 Hb_002942_220--Hb_002400_180 Hb_004678_020 Hb_004678_020 Hb_002942_220--Hb_004678_020 Hb_017168_010 Hb_017168_010 Hb_002942_220--Hb_017168_010 Hb_144787_030 Hb_144787_030 Hb_002942_220--Hb_144787_030 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_000803_300 Hb_000803_300 Hb_000139_250--Hb_000803_300 Hb_000139_250--Hb_144787_030 Hb_001584_290 Hb_001584_290 Hb_010222_080--Hb_001584_290 Hb_010222_080--Hb_017168_010 Hb_010222_080--Hb_000139_250 Hb_010222_080--Hb_004678_020 Hb_004162_280 Hb_004162_280 Hb_010222_080--Hb_004162_280 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_005701_040 Hb_005701_040 Hb_004678_020--Hb_005701_040 Hb_000001_180 Hb_000001_180 Hb_004678_020--Hb_000001_180 Hb_003384_030 Hb_003384_030 Hb_004678_020--Hb_003384_030 Hb_004678_020--Hb_023001_020 Hb_000107_100 Hb_000107_100 Hb_017168_010--Hb_000107_100 Hb_000340_510 Hb_000340_510 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_144787_030--Hb_004162_280 Hb_001541_260 Hb_001541_260 Hb_144787_030--Hb_001541_260 Hb_000946_120 Hb_000946_120 Hb_144787_030--Hb_000946_120 Hb_000236_100 Hb_000236_100 Hb_144787_030--Hb_000236_100 Hb_000422_140 Hb_000422_140 Hb_144787_030--Hb_000422_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.3376 29.7818 11.6262 12.1976 73.9472 51.6057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0598 22.4913 26.4503 13.8216 15.5135

CAGE analysis