Hb_002942_230

Information

Type -
Description -
Location Contig2942: 212550-216893
Sequence    

Annotation

kegg
ID pop:POPTR_0012s10630g
description POPTRDRAFT_834365; serine palmitoyltransferase family protein
nr
ID XP_011042943.1
description PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
swissprot
ID Q9LSZ9
description Long chain base biosynthesis protein 2a OS=Arabidopsis thaliana GN=LCB2a PE=1 SV=1
trembl
ID B9I3X7
description Serine palmitoyltransferase family protein OS=Populus trichocarpa GN=POPTR_0012s10630g PE=3 SV=1
Gene Ontology
ID GO:0016740
description long chain base biosynthesis protein 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30818: 212271-216964 , PASA_asmbl_30819: 212614-213317 , PASA_asmbl_30820: 215522-215724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_230 0.0 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
2 Hb_002217_080 0.0670433818 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
3 Hb_000866_070 0.0670993709 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
4 Hb_001411_130 0.0673931691 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
5 Hb_000001_090 0.0745080648 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
6 Hb_002687_200 0.0782213614 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003540_080 0.0837218627 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_000418_020 0.0872650331 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
9 Hb_000510_150 0.0876296908 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
10 Hb_008725_270 0.0929584221 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
11 Hb_000959_300 0.0933254532 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
12 Hb_029584_120 0.0934950786 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
13 Hb_003680_220 0.0953231163 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
14 Hb_002249_080 0.0957760415 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
15 Hb_000007_090 0.0969988574 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
16 Hb_003687_080 0.0976226767 - - PREDICTED: casein kinase I-like [Jatropha curcas]
17 Hb_000665_170 0.0976412698 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
18 Hb_015884_020 0.0980870835 - - PREDICTED: protein PIR [Jatropha curcas]
19 Hb_003847_040 0.0987507884 - - adenosine diphosphatase, putative [Ricinus communis]
20 Hb_014497_010 0.0987605323 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_230 Hb_002942_230 Hb_002217_080 Hb_002217_080 Hb_002942_230--Hb_002217_080 Hb_000866_070 Hb_000866_070 Hb_002942_230--Hb_000866_070 Hb_001411_130 Hb_001411_130 Hb_002942_230--Hb_001411_130 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080 Hb_002217_080--Hb_001411_130 Hb_000418_020 Hb_000418_020 Hb_002217_080--Hb_000418_020 Hb_002217_080--Hb_002687_200 Hb_002217_080--Hb_000866_070 Hb_000622_330 Hb_000622_330 Hb_002217_080--Hb_000622_330 Hb_000866_070--Hb_000001_090 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_000968_060 Hb_000968_060 Hb_000866_070--Hb_000968_060 Hb_000866_070--Hb_001411_130 Hb_001279_020 Hb_001279_020 Hb_001411_130--Hb_001279_020 Hb_003847_040 Hb_003847_040 Hb_001411_130--Hb_003847_040 Hb_000959_300 Hb_000959_300 Hb_001411_130--Hb_000959_300 Hb_029552_020 Hb_029552_020 Hb_001411_130--Hb_029552_020 Hb_000001_090--Hb_029584_120 Hb_006588_160 Hb_006588_160 Hb_000001_090--Hb_006588_160 Hb_003687_080 Hb_003687_080 Hb_000001_090--Hb_003687_080 Hb_074399_010 Hb_074399_010 Hb_000001_090--Hb_074399_010 Hb_003680_220 Hb_003680_220 Hb_002687_200--Hb_003680_220 Hb_015884_020 Hb_015884_020 Hb_002687_200--Hb_015884_020 Hb_000007_090 Hb_000007_090 Hb_002687_200--Hb_000007_090 Hb_000027_200 Hb_000027_200 Hb_002687_200--Hb_000027_200 Hb_002552_040 Hb_002552_040 Hb_002687_200--Hb_002552_040 Hb_000035_220 Hb_000035_220 Hb_003540_080--Hb_000035_220 Hb_000152_190 Hb_000152_190 Hb_003540_080--Hb_000152_190 Hb_000510_150 Hb_000510_150 Hb_003540_080--Hb_000510_150 Hb_000258_220 Hb_000258_220 Hb_003540_080--Hb_000258_220 Hb_000665_170 Hb_000665_170 Hb_003540_080--Hb_000665_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69658 5.32602 12.893 15.4421 3.73649 3.89184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.16362 2.37942 2.37929 5.99999 11.4609

CAGE analysis