Hb_002944_020

Information

Type transcription factor
Description TF Family: bZIP
Location Contig2944: 42064-49101
Sequence    

Annotation

kegg
ID pop:POPTR_0006s05770g
description hypothetical protein
nr
ID XP_002308062.2
description hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
swissprot
ID O24160
description TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1
trembl
ID B9HA88
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s05770g PE=4 SV=2
Gene Ontology
ID GO:0003700
description transcription factor hbp-1b -like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002944_020 0.0 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
2 Hb_010358_010 0.0407479362 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_153208_010 0.0411426156 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
4 Hb_106528_020 0.0554519614 - - Cationic peroxidase 2 precursor [Theobroma cacao]
5 Hb_000692_270 0.0557708737 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
6 Hb_003188_020 0.0559517248 - - chitinase, putative [Ricinus communis]
7 Hb_014034_020 0.0561906144 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
8 Hb_000563_060 0.0562925746 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
9 Hb_004267_050 0.0571313119 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
10 Hb_004190_030 0.0596173824 - - unnamed protein product [Vitis vinifera]
11 Hb_001140_330 0.0607837864 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
12 Hb_000500_190 0.0611279674 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
13 Hb_038238_010 0.0612671644 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
14 Hb_005433_050 0.0613972076 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
15 Hb_020141_020 0.0627459966 - - -
16 Hb_109163_010 0.0655528328 - - polyphenol oxidase [Hevea brasiliensis]
17 Hb_002835_020 0.0664794951 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
18 Hb_039363_010 0.0665963523 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_004254_070 0.0684896113 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
20 Hb_000388_160 0.0692868502 - - xyloglucan endo-1 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002944_020 Hb_002944_020 Hb_010358_010 Hb_010358_010 Hb_002944_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_002944_020--Hb_153208_010 Hb_106528_020 Hb_106528_020 Hb_002944_020--Hb_106528_020 Hb_000692_270 Hb_000692_270 Hb_002944_020--Hb_000692_270 Hb_003188_020 Hb_003188_020 Hb_002944_020--Hb_003188_020 Hb_014034_020 Hb_014034_020 Hb_002944_020--Hb_014034_020 Hb_010358_010--Hb_153208_010 Hb_010358_010--Hb_106528_020 Hb_020141_020 Hb_020141_020 Hb_010358_010--Hb_020141_020 Hb_038238_010 Hb_038238_010 Hb_010358_010--Hb_038238_010 Hb_004190_030 Hb_004190_030 Hb_010358_010--Hb_004190_030 Hb_153208_010--Hb_003188_020 Hb_109163_010 Hb_109163_010 Hb_153208_010--Hb_109163_010 Hb_153208_010--Hb_014034_020 Hb_000563_060 Hb_000563_060 Hb_153208_010--Hb_000563_060 Hb_106528_020--Hb_038238_010 Hb_005726_030 Hb_005726_030 Hb_106528_020--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_106528_020--Hb_061590_010 Hb_187247_010 Hb_187247_010 Hb_106528_020--Hb_187247_010 Hb_106528_020--Hb_153208_010 Hb_000692_270--Hb_038238_010 Hb_004267_050 Hb_004267_050 Hb_000692_270--Hb_004267_050 Hb_000692_270--Hb_010358_010 Hb_000692_270--Hb_106528_020 Hb_000692_270--Hb_005726_030 Hb_001301_020 Hb_001301_020 Hb_003188_020--Hb_001301_020 Hb_000563_080 Hb_000563_080 Hb_003188_020--Hb_000563_080 Hb_003188_020--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_003188_020--Hb_004254_070 Hb_000446_100 Hb_000446_100 Hb_003188_020--Hb_000446_100 Hb_014034_020--Hb_004254_070 Hb_000500_190 Hb_000500_190 Hb_014034_020--Hb_000500_190 Hb_014034_020--Hb_000446_100 Hb_014034_020--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_014034_020--Hb_000025_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.161081 0.0362618 0.0290065 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0215181 0 0 7.93859 0

CAGE analysis