Hb_002946_160

Information

Type -
Description -
Location Contig2946: 258516-264550
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24880g
description POPTRDRAFT_822690; nodulin 35 family protein
nr
ID XP_012091088.1
description PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
swissprot
ID P34798
description Uricase-2 isozyme 1 OS=Canavalia lineata PE=2 SV=1
trembl
ID A0A067JG25
description Uricase OS=Jatropha curcas GN=JCGZ_03600 PE=3 SV=1
Gene Ontology
ID GO:0016491
description urate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30825: 258433-264657 , PASA_asmbl_30826: 258518-261581 , PASA_asmbl_30827: 261614-262485
cDNA
(Sanger)
(ID:Location)		 007_M12.ab1: 258433-263125 , 009_L15.ab1: 258533-263388 , 028_E22.ab1: 258533-263206 , 044_L23.ab1: 258518-260055 , 047_B13.ab1: 258516-263199 , 050_H19.ab1: 258433-263085 , 052_D16.ab1: 258533-263214

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002946_160 0.0 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
2 Hb_000270_630 0.0830505375 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
3 Hb_030116_020 0.0871374785 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
4 Hb_000367_010 0.0872819213 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
5 Hb_007904_160 0.0908877081 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
6 Hb_000109_210 0.0922616037 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_000983_150 0.0925736688 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
8 Hb_000009_480 0.092817183 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
9 Hb_000523_050 0.0952654766 - - microsomal glutathione s-transferase, putative [Ricinus communis]
10 Hb_002078_020 0.0957055273 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
11 Hb_005503_040 0.0970501598 - - PREDICTED: AMP deaminase [Jatropha curcas]
12 Hb_000630_050 0.0976964342 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000683_070 0.1008296756 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
14 Hb_023480_010 0.1023538467 - - cellular nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000351_120 0.1051377464 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
16 Hb_003693_070 0.1068272064 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
17 Hb_000083_250 0.1074018218 - - ring finger protein, putative [Ricinus communis]
18 Hb_000020_150 0.1091423958 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
19 Hb_000853_230 0.1092690252 - - syntaxin, putative [Ricinus communis]
20 Hb_008246_040 0.1098362324 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]

Gene co-expression network

sample Hb_002946_160 Hb_002946_160 Hb_000270_630 Hb_000270_630 Hb_002946_160--Hb_000270_630 Hb_030116_020 Hb_030116_020 Hb_002946_160--Hb_030116_020 Hb_000367_010 Hb_000367_010 Hb_002946_160--Hb_000367_010 Hb_007904_160 Hb_007904_160 Hb_002946_160--Hb_007904_160 Hb_000109_210 Hb_000109_210 Hb_002946_160--Hb_000109_210 Hb_000983_150 Hb_000983_150 Hb_002946_160--Hb_000983_150 Hb_000523_050 Hb_000523_050 Hb_000270_630--Hb_000523_050 Hb_000009_480 Hb_000009_480 Hb_000270_630--Hb_000009_480 Hb_103012_010 Hb_103012_010 Hb_000270_630--Hb_103012_010 Hb_003813_130 Hb_003813_130 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010 Hb_003747_010 Hb_003747_010 Hb_030116_020--Hb_003747_010 Hb_001172_010 Hb_001172_010 Hb_030116_020--Hb_001172_010 Hb_000700_140 Hb_000700_140 Hb_030116_020--Hb_000700_140 Hb_000123_210 Hb_000123_210 Hb_030116_020--Hb_000123_210 Hb_033834_060 Hb_033834_060 Hb_030116_020--Hb_033834_060 Hb_106371_010 Hb_106371_010 Hb_030116_020--Hb_106371_010 Hb_000367_010--Hb_000983_150 Hb_000367_010--Hb_007904_160 Hb_003680_150 Hb_003680_150 Hb_000367_010--Hb_003680_150 Hb_023480_010 Hb_023480_010 Hb_000367_010--Hb_023480_010 Hb_000367_010--Hb_000700_140 Hb_001617_060 Hb_001617_060 Hb_000367_010--Hb_001617_060 Hb_007904_160--Hb_000983_150 Hb_007904_160--Hb_000109_210 Hb_000212_310 Hb_000212_310 Hb_007904_160--Hb_000212_310 Hb_143629_110 Hb_143629_110 Hb_007904_160--Hb_143629_110 Hb_000083_250 Hb_000083_250 Hb_007904_160--Hb_000083_250 Hb_002684_040 Hb_002684_040 Hb_000109_210--Hb_002684_040 Hb_000470_070 Hb_000470_070 Hb_000109_210--Hb_000470_070 Hb_000333_060 Hb_000333_060 Hb_000109_210--Hb_000333_060 Hb_019654_040 Hb_019654_040 Hb_000109_210--Hb_019654_040 Hb_000109_210--Hb_000983_150 Hb_011174_090 Hb_011174_090 Hb_000109_210--Hb_011174_090 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
169.959 58.8568 73.9895 98.8667 95.344 127.065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.7845 56.3777 66.9645 115.299 42.6949

CAGE analysis