Hb_002947_030

Information

Type -
Description -
Location Contig2947: 57348-60530
Sequence    

Annotation

kegg
ID rcu:RCOM_0623840
description hypothetical protein
nr
ID XP_012071525.1
description PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04046 PE=4 SV=1
Gene Ontology
ID GO:0016740
description ribosomal rna small subunit methyltransferase g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30835: 57732-60265 , PASA_asmbl_30836: 57732-59987
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002947_030 0.0 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
2 Hb_007672_060 0.0611619535 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
3 Hb_033642_030 0.064644516 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
4 Hb_007919_100 0.0702769275 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
5 Hb_019280_030 0.0743318342 - - -
6 Hb_007943_110 0.0783627915 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
7 Hb_007657_010 0.0797875086 - - ATP binding protein, putative [Ricinus communis]
8 Hb_006909_070 0.0807140785 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_008643_210 0.0819494691 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
10 Hb_000606_090 0.0830506918 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_032050_040 0.083386639 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
12 Hb_000060_090 0.0841084055 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
13 Hb_001882_050 0.0844343801 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
14 Hb_002374_370 0.0851422229 - - protein with unknown function [Ricinus communis]
15 Hb_000484_030 0.0853074806 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
16 Hb_007416_340 0.0859126918 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000200_380 0.0865577769 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]
18 Hb_033720_010 0.0872070383 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
19 Hb_001195_560 0.0874447439 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
20 Hb_004841_010 0.0876837043 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002947_030 Hb_002947_030 Hb_007672_060 Hb_007672_060 Hb_002947_030--Hb_007672_060 Hb_033642_030 Hb_033642_030 Hb_002947_030--Hb_033642_030 Hb_007919_100 Hb_007919_100 Hb_002947_030--Hb_007919_100 Hb_019280_030 Hb_019280_030 Hb_002947_030--Hb_019280_030 Hb_007943_110 Hb_007943_110 Hb_002947_030--Hb_007943_110 Hb_007657_010 Hb_007657_010 Hb_002947_030--Hb_007657_010 Hb_000054_090 Hb_000054_090 Hb_007672_060--Hb_000054_090 Hb_001579_270 Hb_001579_270 Hb_007672_060--Hb_001579_270 Hb_000599_300 Hb_000599_300 Hb_007672_060--Hb_000599_300 Hb_033594_120 Hb_033594_120 Hb_007672_060--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_007672_060--Hb_003428_030 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_032050_040 Hb_032050_040 Hb_007919_100--Hb_032050_040 Hb_152202_010 Hb_152202_010 Hb_007919_100--Hb_152202_010 Hb_006909_070 Hb_006909_070 Hb_007919_100--Hb_006909_070 Hb_002273_120 Hb_002273_120 Hb_007919_100--Hb_002273_120 Hb_000300_050 Hb_000300_050 Hb_007919_100--Hb_000300_050 Hb_001922_150 Hb_001922_150 Hb_019280_030--Hb_001922_150 Hb_007416_340 Hb_007416_340 Hb_019280_030--Hb_007416_340 Hb_004097_070 Hb_004097_070 Hb_019280_030--Hb_004097_070 Hb_019280_030--Hb_000200_380 Hb_000484_030 Hb_000484_030 Hb_019280_030--Hb_000484_030 Hb_019280_030--Hb_033642_030 Hb_014361_070 Hb_014361_070 Hb_007943_110--Hb_014361_070 Hb_007943_110--Hb_000060_090 Hb_003371_110 Hb_003371_110 Hb_007943_110--Hb_003371_110 Hb_006882_020 Hb_006882_020 Hb_007943_110--Hb_006882_020 Hb_003029_110 Hb_003029_110 Hb_007943_110--Hb_003029_110 Hb_007943_110--Hb_006909_070 Hb_001902_030 Hb_001902_030 Hb_007657_010--Hb_001902_030 Hb_008221_180 Hb_008221_180 Hb_007657_010--Hb_008221_180 Hb_000346_060 Hb_000346_060 Hb_007657_010--Hb_000346_060 Hb_002263_020 Hb_002263_020 Hb_007657_010--Hb_002263_020 Hb_000343_250 Hb_000343_250 Hb_007657_010--Hb_000343_250 Hb_007657_010--Hb_004097_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.057 13.9524 14.4958 21.8964 25.9257 26.1682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6702 18.9835 14.0784 11.1498 21.548

CAGE analysis