Hb_002955_010

Information

Type -
Description -
Location Contig2955: 26113-49218
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15710g
description POPTRDRAFT_1097738; hypothetical protein
nr
ID XP_012077676.1
description PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
swissprot
ID Q14191
description Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2
trembl
ID B9I791
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s15710g PE=4 SV=2
Gene Ontology
ID GO:0003676
description werner syndrome atp-dependent helicase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30888: 26328-26720 , PASA_asmbl_30889: 34484-36954 , PASA_asmbl_30890: 47259-47948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002955_010 0.0 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
2 Hb_000256_270 0.0725676422 - - PREDICTED: large proline-rich protein bag6-B isoform X1 [Jatropha curcas]
3 Hb_000732_020 0.0773389958 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
4 Hb_009615_110 0.0807438465 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
5 Hb_000372_040 0.0857207309 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000684_180 0.091355297 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
7 Hb_002986_050 0.0922300997 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
8 Hb_000212_280 0.0942853867 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
9 Hb_000318_140 0.0970345881 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
10 Hb_113216_010 0.0975193839 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
11 Hb_002837_070 0.0993429968 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
12 Hb_000814_090 0.1002477059 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002475_050 0.1009632896 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
14 Hb_000237_230 0.1012831079 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
15 Hb_000282_150 0.101902011 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
16 Hb_033642_020 0.1030148854 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
17 Hb_000270_450 0.1039264134 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
18 Hb_002290_060 0.1047099726 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
19 Hb_005000_270 0.1071398586 - - unnamed protein product [Vitis vinifera]
20 Hb_001582_030 0.1074835605 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]

Gene co-expression network

sample Hb_002955_010 Hb_002955_010 Hb_000256_270 Hb_000256_270 Hb_002955_010--Hb_000256_270 Hb_000732_020 Hb_000732_020 Hb_002955_010--Hb_000732_020 Hb_009615_110 Hb_009615_110 Hb_002955_010--Hb_009615_110 Hb_000372_040 Hb_000372_040 Hb_002955_010--Hb_000372_040 Hb_000684_180 Hb_000684_180 Hb_002955_010--Hb_000684_180 Hb_002986_050 Hb_002986_050 Hb_002955_010--Hb_002986_050 Hb_001477_010 Hb_001477_010 Hb_000256_270--Hb_001477_010 Hb_000565_020 Hb_000565_020 Hb_000256_270--Hb_000565_020 Hb_023327_030 Hb_023327_030 Hb_000256_270--Hb_023327_030 Hb_113216_010 Hb_113216_010 Hb_000256_270--Hb_113216_010 Hb_000256_270--Hb_000372_040 Hb_000732_020--Hb_113216_010 Hb_001582_030 Hb_001582_030 Hb_000732_020--Hb_001582_030 Hb_000732_020--Hb_002986_050 Hb_000322_170 Hb_000322_170 Hb_000732_020--Hb_000322_170 Hb_000270_450 Hb_000270_450 Hb_000732_020--Hb_000270_450 Hb_000318_140 Hb_000318_140 Hb_009615_110--Hb_000318_140 Hb_000320_440 Hb_000320_440 Hb_009615_110--Hb_000320_440 Hb_001009_050 Hb_001009_050 Hb_009615_110--Hb_001009_050 Hb_009615_110--Hb_000270_450 Hb_006173_020 Hb_006173_020 Hb_009615_110--Hb_006173_020 Hb_002475_050 Hb_002475_050 Hb_000372_040--Hb_002475_050 Hb_004881_050 Hb_004881_050 Hb_000372_040--Hb_004881_050 Hb_079326_010 Hb_079326_010 Hb_000372_040--Hb_079326_010 Hb_002739_080 Hb_002739_080 Hb_000372_040--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_000372_040--Hb_005000_270 Hb_000134_360 Hb_000134_360 Hb_000372_040--Hb_000134_360 Hb_000573_040 Hb_000573_040 Hb_000684_180--Hb_000573_040 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_003352_050 Hb_003352_050 Hb_000684_180--Hb_003352_050 Hb_000684_180--Hb_000134_360 Hb_011644_020 Hb_011644_020 Hb_000684_180--Hb_011644_020 Hb_001195_030 Hb_001195_030 Hb_000684_180--Hb_001195_030 Hb_002986_050--Hb_002475_050 Hb_000212_280 Hb_000212_280 Hb_002986_050--Hb_000212_280 Hb_002986_050--Hb_000372_040 Hb_002986_050--Hb_005000_270 Hb_003216_110 Hb_003216_110 Hb_002986_050--Hb_003216_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2821 3.65438 1.99833 2.16767 14.3387 21.6043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.64209 4.04746 3.56781 2.68867 0.852515

CAGE analysis