Hb_002955_030

Information

Type -
Description -
Location Contig2955: 69199-73303
Sequence    

Annotation

kegg
ID rcu:RCOM_1027640
description hypothetical protein
nr
ID XP_002526388.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6PGS5
description Transmembrane protein 56-B OS=Xenopus laevis GN=tmem56-b PE=2 SV=1
trembl
ID B9SK69
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1027640 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 56-b isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30893: 69072-78045
cDNA
(Sanger)
(ID:Location)		 009_H11.ab1: 70079-77826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002955_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001504_170 0.0990377845 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
3 Hb_000345_560 0.0991564097 - - -
4 Hb_003055_050 0.0992825606 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
5 Hb_031042_040 0.1013845747 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
6 Hb_000028_050 0.1048553878 - - aldose-1-epimerase, putative [Ricinus communis]
7 Hb_002377_040 0.1049697889 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000085_340 0.1075686297 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
9 Hb_013479_020 0.1101067508 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_023226_060 0.1141662995 - - unnamed protein product [Vitis vinifera]
11 Hb_003352_050 0.115268222 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
12 Hb_017098_030 0.1155420669 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
13 Hb_002716_150 0.1205857533 - - starch synthase isoform I [Manihot esculenta]
14 Hb_002391_110 0.1206791607 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
15 Hb_000172_120 0.1232894745 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
16 Hb_002067_160 0.1240523214 - - Protein MLO, putative [Ricinus communis]
17 Hb_000062_230 0.1256162644 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
18 Hb_010174_130 0.1268036881 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
19 Hb_000599_120 0.1274571837 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
20 Hb_000003_090 0.1277752168 - - -

Gene co-expression network

sample Hb_002955_030 Hb_002955_030 Hb_001504_170 Hb_001504_170 Hb_002955_030--Hb_001504_170 Hb_000345_560 Hb_000345_560 Hb_002955_030--Hb_000345_560 Hb_003055_050 Hb_003055_050 Hb_002955_030--Hb_003055_050 Hb_031042_040 Hb_031042_040 Hb_002955_030--Hb_031042_040 Hb_000028_050 Hb_000028_050 Hb_002955_030--Hb_000028_050 Hb_002377_040 Hb_002377_040 Hb_002955_030--Hb_002377_040 Hb_013479_020 Hb_013479_020 Hb_001504_170--Hb_013479_020 Hb_002942_030 Hb_002942_030 Hb_001504_170--Hb_002942_030 Hb_003786_110 Hb_003786_110 Hb_001504_170--Hb_003786_110 Hb_001504_170--Hb_000345_560 Hb_000329_610 Hb_000329_610 Hb_001504_170--Hb_000329_610 Hb_007992_030 Hb_007992_030 Hb_000345_560--Hb_007992_030 Hb_004502_030 Hb_004502_030 Hb_000345_560--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_000345_560--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_000345_560--Hb_002997_170 Hb_000345_560--Hb_003055_050 Hb_168918_020 Hb_168918_020 Hb_000345_560--Hb_168918_020 Hb_017098_030 Hb_017098_030 Hb_003055_050--Hb_017098_030 Hb_000085_340 Hb_000085_340 Hb_003055_050--Hb_000085_340 Hb_003055_050--Hb_007992_030 Hb_001493_100 Hb_001493_100 Hb_003055_050--Hb_001493_100 Hb_010174_130 Hb_010174_130 Hb_031042_040--Hb_010174_130 Hb_031042_040--Hb_002377_040 Hb_002716_150 Hb_002716_150 Hb_031042_040--Hb_002716_150 Hb_031042_040--Hb_000085_340 Hb_000034_140 Hb_000034_140 Hb_031042_040--Hb_000034_140 Hb_003352_050 Hb_003352_050 Hb_000028_050--Hb_003352_050 Hb_000186_010 Hb_000186_010 Hb_000028_050--Hb_000186_010 Hb_000085_280 Hb_000085_280 Hb_000028_050--Hb_000085_280 Hb_003050_040 Hb_003050_040 Hb_000028_050--Hb_003050_040 Hb_000028_050--Hb_013479_020 Hb_000028_050--Hb_000085_340 Hb_000062_230 Hb_000062_230 Hb_002377_040--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002377_040--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_002377_040--Hb_002044_090 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_002377_040--Hb_000085_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.377 2.82335 14.0987 20.2408 133.078 131.263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.5565 55.4171 55.3538 9.75587 16.9494

CAGE analysis