Hb_002960_010

Information

Type -
Description -
Location Contig2960: 5596-7830
Sequence    

Annotation

kegg
ID rcu:RCOM_1598220
description Zeamatin precursor, putative
nr
ID XP_002510548.1
description Zeamatin precursor, putative [Ricinus communis]
swissprot
ID P83332
description Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1
trembl
ID B9R8A5
description Zeamatin, putative OS=Ricinus communis GN=RCOM_1598220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30941: 6067-7905 , PASA_asmbl_30942: 7076-7939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_010 0.0 - - Zeamatin precursor, putative [Ricinus communis]
2 Hb_002811_330 0.1015042854 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
3 Hb_000521_360 0.1043019851 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
4 Hb_007676_040 0.107402066 - - cellulose synthase, putative [Ricinus communis]
5 Hb_005168_030 0.1138908386 - - unknown [Zea mays]
6 Hb_005542_040 0.1156975328 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
7 Hb_001345_010 0.1236706507 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
8 Hb_004079_110 0.1329584181 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
9 Hb_004586_110 0.1425997196 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
10 Hb_107809_010 0.1430056843 - - JHL06P13.14 [Jatropha curcas]
11 Hb_002003_030 0.144914055 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
12 Hb_001565_010 0.1451011266 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
13 Hb_000501_110 0.1468122323 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
14 Hb_000471_010 0.1481756023 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000684_490 0.1549041466 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
16 Hb_150730_010 0.1558506494 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_005614_030 0.1560270252 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
18 Hb_005010_040 0.1563899439 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
19 Hb_106321_010 0.1565164501 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
20 Hb_009778_050 0.1574621473 - - hypothetical protein JCGZ_08917 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_010 Hb_002960_010 Hb_002811_330 Hb_002811_330 Hb_002960_010--Hb_002811_330 Hb_000521_360 Hb_000521_360 Hb_002960_010--Hb_000521_360 Hb_007676_040 Hb_007676_040 Hb_002960_010--Hb_007676_040 Hb_005168_030 Hb_005168_030 Hb_002960_010--Hb_005168_030 Hb_005542_040 Hb_005542_040 Hb_002960_010--Hb_005542_040 Hb_001345_010 Hb_001345_010 Hb_002960_010--Hb_001345_010 Hb_136546_010 Hb_136546_010 Hb_002811_330--Hb_136546_010 Hb_004079_110 Hb_004079_110 Hb_002811_330--Hb_004079_110 Hb_002811_330--Hb_007676_040 Hb_002811_330--Hb_000521_360 Hb_002435_080 Hb_002435_080 Hb_002811_330--Hb_002435_080 Hb_000521_360--Hb_001345_010 Hb_107809_010 Hb_107809_010 Hb_000521_360--Hb_107809_010 Hb_000521_360--Hb_005542_040 Hb_001565_010 Hb_001565_010 Hb_000521_360--Hb_001565_010 Hb_005276_220 Hb_005276_220 Hb_000521_360--Hb_005276_220 Hb_000521_360--Hb_007676_040 Hb_007676_040--Hb_005542_040 Hb_007676_040--Hb_001345_010 Hb_000501_110 Hb_000501_110 Hb_007676_040--Hb_000501_110 Hb_000108_090 Hb_000108_090 Hb_007676_040--Hb_000108_090 Hb_001634_080 Hb_001634_080 Hb_007676_040--Hb_001634_080 Hb_106321_010 Hb_106321_010 Hb_005168_030--Hb_106321_010 Hb_123560_020 Hb_123560_020 Hb_005168_030--Hb_123560_020 Hb_011440_010 Hb_011440_010 Hb_005168_030--Hb_011440_010 Hb_004586_110 Hb_004586_110 Hb_005168_030--Hb_004586_110 Hb_002003_030 Hb_002003_030 Hb_005168_030--Hb_002003_030 Hb_005542_040--Hb_107809_010 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_005542_040--Hb_000108_090 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_003842_010 Hb_003842_010 Hb_001345_010--Hb_003842_010 Hb_001345_010--Hb_005542_040 Hb_001345_010--Hb_001565_010 Hb_001345_010--Hb_005276_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.45565 14.7626 2.68136 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0936152 0.220949 0 28.016 6.26605

CAGE analysis