Hb_002960_060

Information

Type -
Description -
Location Contig2960: 48655-59475
Sequence    

Annotation

kegg
ID rcu:RCOM_1598290
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012075065.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
swissprot
ID Q9ZRZ8
description DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1
trembl
ID A0A067KGR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10804 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30946: 48642-60400 , PASA_asmbl_30947: 56574-56874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_060 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
2 Hb_000029_160 0.0757446272 - - Nitrilase, putative [Ricinus communis]
3 Hb_001975_070 0.0826847954 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
4 Hb_005147_110 0.0863823086 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
5 Hb_002169_010 0.0871656768 - - PREDICTED: la-related protein 6B [Jatropha curcas]
6 Hb_004310_060 0.0901777817 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000808_180 0.0922654703 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
8 Hb_018663_020 0.0957569173 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
9 Hb_001009_050 0.0968200133 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
10 Hb_001366_040 0.0981045634 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
11 Hb_000879_140 0.1003116015 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
12 Hb_029281_010 0.1012643606 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
13 Hb_000172_550 0.1016850246 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
14 Hb_117950_020 0.1022486208 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
15 Hb_042083_070 0.103215586 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_000300_280 0.1039959217 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
17 Hb_000310_080 0.1049209797 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
18 Hb_010866_040 0.1051775416 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
19 Hb_001341_030 0.1077541047 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
20 Hb_005314_010 0.1087160412 - - nucleotide binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002960_060 Hb_002960_060 Hb_000029_160 Hb_000029_160 Hb_002960_060--Hb_000029_160 Hb_001975_070 Hb_001975_070 Hb_002960_060--Hb_001975_070 Hb_005147_110 Hb_005147_110 Hb_002960_060--Hb_005147_110 Hb_002169_010 Hb_002169_010 Hb_002960_060--Hb_002169_010 Hb_004310_060 Hb_004310_060 Hb_002960_060--Hb_004310_060 Hb_000808_180 Hb_000808_180 Hb_002960_060--Hb_000808_180 Hb_000172_550 Hb_000172_550 Hb_000029_160--Hb_000172_550 Hb_000029_160--Hb_001975_070 Hb_027405_020 Hb_027405_020 Hb_000029_160--Hb_027405_020 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_000310_080 Hb_000310_080 Hb_000029_160--Hb_000310_080 Hb_001975_070--Hb_005147_110 Hb_001009_050 Hb_001009_050 Hb_001975_070--Hb_001009_050 Hb_001341_030 Hb_001341_030 Hb_001975_070--Hb_001341_030 Hb_000373_270 Hb_000373_270 Hb_001975_070--Hb_000373_270 Hb_008725_250 Hb_008725_250 Hb_005147_110--Hb_008725_250 Hb_005147_110--Hb_004310_060 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_005147_110--Hb_000373_270 Hb_029281_010 Hb_029281_010 Hb_002169_010--Hb_029281_010 Hb_011496_010 Hb_011496_010 Hb_002169_010--Hb_011496_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_000462_150 Hb_000462_150 Hb_002169_010--Hb_000462_150 Hb_002377_050 Hb_002377_050 Hb_002169_010--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_002169_010--Hb_002818_040 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_004310_060--Hb_008725_250 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020 Hb_033152_080 Hb_033152_080 Hb_000808_180--Hb_033152_080 Hb_001516_100 Hb_001516_100 Hb_000808_180--Hb_001516_100 Hb_001366_040 Hb_001366_040 Hb_000808_180--Hb_001366_040 Hb_002798_040 Hb_002798_040 Hb_000808_180--Hb_002798_040 Hb_004734_060 Hb_004734_060 Hb_000808_180--Hb_004734_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.9157 21.0329 4.25391 3.7118 41.3421 38.7283
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.2393 14.7337 20.6772 22.7421 3.91627

CAGE analysis