Hb_002960_120

Information

Type -
Description -
Location Contig2960: 110861-111634
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02120g
description POPTRDRAFT_550861; hypothetical protein
nr
ID XP_012073766.1
description PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08192 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30968: 110451-112004 , PASA_asmbl_30969: 110475-111380
cDNA
(Sanger)
(ID:Location)		 002_J14.ab1: 110451-111236 , 031_L08.ab1: 110451-111242 , 047_C06.ab1: 110451-111242

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_120 0.0 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
2 Hb_094437_070 0.1178377116 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
3 Hb_003906_110 0.1278610783 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
4 Hb_004884_060 0.1384127273 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
5 Hb_007545_210 0.1422333489 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
6 Hb_000085_340 0.1441095712 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
7 Hb_019654_070 0.1449233083 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
8 Hb_002067_160 0.1466397962 - - Protein MLO, putative [Ricinus communis]
9 Hb_004738_090 0.147125759 - - conserved hypothetical protein [Ricinus communis]
10 Hb_098315_100 0.1476044755 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
11 Hb_000155_080 0.1488658707 - - guanylate-binding family protein [Populus trichocarpa]
12 Hb_000138_190 0.148910906 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
13 Hb_134310_010 0.1508585754 - - PREDICTED: ATP-dependent DNA helicase MER3 homolog [Jatropha curcas]
14 Hb_002989_080 0.1534263927 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
15 Hb_002025_230 0.1546063831 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
16 Hb_019613_020 0.1549096543 - - phospholipase C, putative [Ricinus communis]
17 Hb_010931_100 0.1562612609 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
18 Hb_004126_010 0.1568008805 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
19 Hb_007178_010 0.1573193824 - - pseudo-hevein [Hevea brasiliensis]
20 Hb_005488_100 0.1605565197 - - hypothetical protein JCGZ_00295 [Jatropha curcas]

Gene co-expression network

sample Hb_002960_120 Hb_002960_120 Hb_094437_070 Hb_094437_070 Hb_002960_120--Hb_094437_070 Hb_003906_110 Hb_003906_110 Hb_002960_120--Hb_003906_110 Hb_004884_060 Hb_004884_060 Hb_002960_120--Hb_004884_060 Hb_007545_210 Hb_007545_210 Hb_002960_120--Hb_007545_210 Hb_000085_340 Hb_000085_340 Hb_002960_120--Hb_000085_340 Hb_019654_070 Hb_019654_070 Hb_002960_120--Hb_019654_070 Hb_094437_070--Hb_000085_340 Hb_011316_030 Hb_011316_030 Hb_094437_070--Hb_011316_030 Hb_127979_010 Hb_127979_010 Hb_094437_070--Hb_127979_010 Hb_019613_020 Hb_019613_020 Hb_094437_070--Hb_019613_020 Hb_005754_020 Hb_005754_020 Hb_094437_070--Hb_005754_020 Hb_035524_030 Hb_035524_030 Hb_094437_070--Hb_035524_030 Hb_003906_120 Hb_003906_120 Hb_003906_110--Hb_003906_120 Hb_003906_110--Hb_004884_060 Hb_010931_100 Hb_010931_100 Hb_003906_110--Hb_010931_100 Hb_007178_010 Hb_007178_010 Hb_003906_110--Hb_007178_010 Hb_002989_080 Hb_002989_080 Hb_003906_110--Hb_002989_080 Hb_000249_110 Hb_000249_110 Hb_003906_110--Hb_000249_110 Hb_004884_060--Hb_000249_110 Hb_000907_100 Hb_000907_100 Hb_004884_060--Hb_000907_100 Hb_004884_060--Hb_002989_080 Hb_004884_060--Hb_007178_010 Hb_002843_160 Hb_002843_160 Hb_004884_060--Hb_002843_160 Hb_002388_060 Hb_002388_060 Hb_007545_210--Hb_002388_060 Hb_000270_400 Hb_000270_400 Hb_007545_210--Hb_000270_400 Hb_000523_020 Hb_000523_020 Hb_007545_210--Hb_000523_020 Hb_000416_100 Hb_000416_100 Hb_007545_210--Hb_000416_100 Hb_002627_060 Hb_002627_060 Hb_007545_210--Hb_002627_060 Hb_000376_150 Hb_000376_150 Hb_007545_210--Hb_000376_150 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_098315_100 Hb_098315_100 Hb_019654_070--Hb_098315_100 Hb_000155_080 Hb_000155_080 Hb_019654_070--Hb_000155_080 Hb_003656_030 Hb_003656_030 Hb_019654_070--Hb_003656_030 Hb_019654_070--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_019654_070--Hb_005488_100 Hb_019654_070--Hb_007178_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
442.69 10.004 46.4784 18.7042 251.814 394.57
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
177.448 57.4496 229.494 26.1572 1.88596

CAGE analysis