Hb_002960_170

Information

Type -
Description -
Location Contig2960: 148625-152318
Sequence    

Annotation

kegg
ID rcu:RCOM_1598620
description hypothetical protein
nr
ID XP_012073886.1
description PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
swissprot
ID Q8H1D6
description Receptor-like cytosolic serine/threonine-protein kinase RBK1 OS=Arabidopsis thaliana GN=RBK1 PE=1 SV=1
trembl
ID E6NTZ7
description JHL20J20.14 protein OS=Jatropha curcas GN=JHL20J20.14 PE=4 SV=1
Gene Ontology
ID GO:0000166
description kinase protein with adenine nucleotide alpha hydrolases-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30977: 149934-150353 , PASA_asmbl_30978: 150815-151242 , PASA_asmbl_30979: 151338-151903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002960_170 0.0 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
2 Hb_003399_030 0.1311028621 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
3 Hb_000684_020 0.1427776824 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_003900_050 0.1459154047 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
5 Hb_110218_010 0.1466961606 - - PREDICTED: uncharacterized protein LOC104428128 [Eucalyptus grandis]
6 Hb_004200_040 0.1537705127 - - laccase, putative [Ricinus communis]
7 Hb_006452_050 0.1574199868 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
8 Hb_004463_040 0.1588018966 - - -
9 Hb_000205_210 0.1595020898 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
10 Hb_008768_010 0.1621821589 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
11 Hb_000046_060 0.1622408491 - - sugar transporter, putative [Ricinus communis]
12 Hb_004881_060 0.1634082816 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
13 Hb_009012_020 0.1658089058 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
14 Hb_000984_080 0.1676164614 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
15 Hb_007894_260 0.168919954 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_001504_220 0.1712279065 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000140_260 0.1724521749 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
18 Hb_000422_020 0.1800209607 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_108884_020 0.1801074608 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
20 Hb_001649_040 0.1807102008 - - Polygalacturonase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002960_170 Hb_002960_170 Hb_003399_030 Hb_003399_030 Hb_002960_170--Hb_003399_030 Hb_000684_020 Hb_000684_020 Hb_002960_170--Hb_000684_020 Hb_003900_050 Hb_003900_050 Hb_002960_170--Hb_003900_050 Hb_110218_010 Hb_110218_010 Hb_002960_170--Hb_110218_010 Hb_004200_040 Hb_004200_040 Hb_002960_170--Hb_004200_040 Hb_006452_050 Hb_006452_050 Hb_002960_170--Hb_006452_050 Hb_001838_050 Hb_001838_050 Hb_003399_030--Hb_001838_050 Hb_000984_080 Hb_000984_080 Hb_003399_030--Hb_000984_080 Hb_088916_010 Hb_088916_010 Hb_003399_030--Hb_088916_010 Hb_001135_290 Hb_001135_290 Hb_003399_030--Hb_001135_290 Hb_001678_030 Hb_001678_030 Hb_003399_030--Hb_001678_030 Hb_000684_020--Hb_110218_010 Hb_000684_020--Hb_004200_040 Hb_009012_020 Hb_009012_020 Hb_000684_020--Hb_009012_020 Hb_004463_040 Hb_004463_040 Hb_000684_020--Hb_004463_040 Hb_002553_120 Hb_002553_120 Hb_000684_020--Hb_002553_120 Hb_000684_020--Hb_003900_050 Hb_003900_050--Hb_004200_040 Hb_003900_050--Hb_004463_040 Hb_000205_210 Hb_000205_210 Hb_003900_050--Hb_000205_210 Hb_000140_260 Hb_000140_260 Hb_003900_050--Hb_000140_260 Hb_004881_060 Hb_004881_060 Hb_003900_050--Hb_004881_060 Hb_110218_010--Hb_009012_020 Hb_110218_010--Hb_004463_040 Hb_110218_010--Hb_003900_050 Hb_000976_020 Hb_000976_020 Hb_110218_010--Hb_000976_020 Hb_110218_010--Hb_004200_040 Hb_004200_040--Hb_000140_260 Hb_004200_040--Hb_000205_210 Hb_004200_040--Hb_004463_040 Hb_027141_010 Hb_027141_010 Hb_004200_040--Hb_027141_010 Hb_012019_020 Hb_012019_020 Hb_006452_050--Hb_012019_020 Hb_002234_150 Hb_002234_150 Hb_006452_050--Hb_002234_150 Hb_112082_030 Hb_112082_030 Hb_006452_050--Hb_112082_030 Hb_000101_050 Hb_000101_050 Hb_006452_050--Hb_000101_050 Hb_000411_060 Hb_000411_060 Hb_006452_050--Hb_000411_060 Hb_006452_050--Hb_000976_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.234025 0.017671 0.0702418 0.00755786 0.00708237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.040445 0 0.920634 0.1147

CAGE analysis